PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018869m
Common NameEUTSA_v10018869mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NF-YA
Protein Properties Length: 325aa    MW: 35932.1 Da    PI: 9.8482
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018869mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.87.4e-33163218258
        CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      ep++VNaKQy++I++RRq+Rakle+++kl +ksrkpylheSRh hAl+RpRgsgGrF
  Thhalv10018869m 163 EPVFVNAKQYHAIMRRRQQRAKLEAQNKL-IKSRKPYLHESRHVHALKRPRGSGGRF 218
                      8****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.8E-38160221IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.047161221IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.1E-27163218IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.6E-24164186IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860166186IPR018362CCAAT-binding factor, conserved site
PRINTSPR006168.6E-24195218IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MHQINKKDST LPYLNTSISW GVVPTETLSL KVDARPEHIQ TTKQISFQDQ DSSSTQSTGQ  60
SYTEVASSED DNPSRQISFS AKPGSEDTQR KGFATIPKSG SMTGVSNIHF APTQANFSFH  120
YADPHFGGLL AATYLPQAPT CHPQMVGMIP GRVPLPVELT EAEPVFVNAK QYHAIMRRRQ  180
QRAKLEAQNK LIKSRKPYLH ESRHVHALKR PRGSGGRFLN TKKLLQESEQ AAAREQEHGK  240
SVQRENKKAN MSRFEAHMLQ NNKDRGSTTS GSDITSVSDG ADIFGHADFQ FSGFPTQTNR  300
AMLVHGQSND MHGGGDMHHF SVHI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-20163222362NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018869m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1400280.0AY140028.1 Arabidopsis thaliana CCAAT-binding factor B subunit-like protein, putative (At1g72830) mRNA, complete cds.
GenBankBT0088250.0BT008825.1 Arabidopsis thaliana At1g72830 mRNA, complete cds.
GenBankY137220.0Y13722.1 Arabidopsis thaliana mRNA for Hap2c transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390615.10.0nuclear transcription factor Y subunit A-3 isoform X1
SwissprotQ93ZH20.0NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLV4M9Q40.0V4M9Q4_EUTSA; Uncharacterized protein
STRINGXP_006390615.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33492762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.10.0nuclear factor Y, subunit A3