PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018824m
Common NameEUTSA_v10018824mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 339aa    MW: 38696.9 Da    PI: 5.8569
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018824mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68.4e-31207266159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  Thhalv10018824m 207 MNDGCQWRKYGQKTAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 266
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-33192268IPR003657WRKY domain
SuperFamilySSF1182904.84E-28200268IPR003657WRKY domain
PROSITE profilePS5081129.023202268IPR003657WRKY domain
SMARTSM007741.9E-37207267IPR003657WRKY domain
PfamPF031061.2E-27208266IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MMDIDLSLKL EKEKHEERTK HSCKKKEELE EDDDDDSDDE DEQMVKEDDV DESCLGSRTR  60
KEENEREELL QMQIEMEHVK EENTRLRKLV EQTLQDYRHL EMKLPVIDQT NKMDLETFLG  120
AQGSWYVDKA RKRGAGRSKS EERELGLSLS LQKKQKQEET NKEDETHQQR FMNSSSLDTN  180
APRVISSSPG NRKARVSVRA RCETATMNDG CQWRKYGQKT AKGNPCPRAY YRCTVAPGCP  240
VRKQVQRCLE DMSILITTYE GTHNHPLPVG ATAMASTAST SPFVLLDSSD NLSHPNSYIH  300
QNGSNNRSIR SFNFDDPSSR GGGGDHVSSS QNRFNWMI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-23194270176WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130155RKRGAGRSKSEERELGLSLSLQKKQK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018824m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391179.10.0probable WRKY transcription factor 9
SwissprotQ9C9F01e-168WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLV4JT140.0V4JT14_EUTSA; Uncharacterized protein
STRINGXP_006391179.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67362741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-136WRKY DNA-binding protein 9