PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018822m
Common NameEUTSA_v10018822mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 340aa    MW: 37323.8 Da    PI: 7.9779
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018822mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.18.2e-13165209347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E++l++ + ++ G+g+Wk I++ + k Rt  q+ s+ qky
  Thhalv10018822m 165 PWTEDEHKLFLFGLQKVGKGDWKGISKNFVKSRTSTQVASHAQKY 209
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.071158214IPR017930Myb domain
SuperFamilySSF466892.92E-16160214IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-16161212IPR006447Myb domain, plants
SMARTSM007172.2E-8162212IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-10164208IPR009057Homeodomain-like
PfamPF002495.7E-10165209IPR001005SANT/Myb domain
CDDcd001671.17E-7165210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MKNYVERQAG KTEDNDRRIK IRHVSDDTIT SSYNITDLLT PLHCHCSVLF DLLPLSERGK  60
KKPAQANLMA EGSNSSSDST VSCGGGGIRR EIMLFGVRVV LDPMRKSVSL NNLSEYEQTE  120
EIPKICGEDG DVQDKNKTSS GYASADDAVP ISSSGGNRER KRGVPWTEDE HKLFLFGLQK  180
VGKGDWKGIS KNFVKSRTST QVASHAQKYF IRRSNLNRRR RRSSLFDITT DTVMSTEEDQ  240
VLMQENTSPQ SPSLVPEINN FSMYPVMQVF PEFSVPTSGG DSSGNQSHGL IPSSNFINLV  300
PLTFQASPAP LSLSLSLASS NLYEPSSSRQ SAFNTIGVA*
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00236DAPTransfer from AT1G74840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018822m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533430.0AK353343.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-41-E23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024010902.10.0transcription factor MYB1R1
SwissprotQ2V9B05e-55MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLV4JR150.0V4JR15_EUTSA; Uncharacterized protein
STRINGXP_006390384.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24612669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.11e-118MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]