PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018773m
Common NameEUTSA_v10018773mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family TCP
Protein Properties Length: 357aa    MW: 40305.2 Da    PI: 8.6966
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018773mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP139.62.5e-431082333133
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 
                      +k+drhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ ++k++i +  ++ s s       + ++ ++     +++a++++
  Thhalv10018773m 108 KKRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLISKSKASINQVKESVSASR--GgGGDYEHLQV-----NEKARDET 194
                      699************************************************************43333..22222222232.....35556666 PP

              TCP  96 .kskksqksaasalnlakesrakarararertrekmrik 133
                       k +k+++++ + + ++kesr+kar+rarert  km+++
  Thhalv10018773m 195 lKVSKRRTKTVESSCKKKESREKARERARERTMTKMNMR 233
                      599999999998899999*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-34108171IPR005333Transcription factor, TCP
PROSITE profilePS5136935.031109167IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.195212229IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MFPSIDTNGY DHFDPFNPHL TTMLPSFTTH IQSPSSHHHH PLPSFSFSSA FLDESVLISQ  60
FLLPQQDAAK NVVESPRKVC KTLEQKKNTE KCVDGTTSEK VPRRRTGKKR DRHSKICTAQ  120
GPRDRRMRLS LQIARKFFDL QDMLGFDKAS KTIEWLISKS KASINQVKES VSASRGGGGD  180
YEHLQVNEKA RDETLKVSKR RTKTVESSCK KKESREKARE RARERTMTKM NMRLSGLIDS  240
SKTFSDPHQE TRKAKITGGA QILEEEDHEQ EQEWSNANMN VVGYQMDSVS IIEKFLGLTS  300
DSSSSSIFGD SEEPYTNLGS IRGMVTPMQD TTTSTASVDE ERNLISSFSL NDYLCY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194200LKVSKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents axillary bud outgrowth. May also delay early axillary bud development. Probably involved in the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018773m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391095.10.0transcription factor TCP12 isoform X1
SwissprotA0AQW41e-162TCP12_ARATH; Transcription factor TCP12
TrEMBLV4MB030.0V4MB03_EUTSA; Uncharacterized protein
STRINGXP_006391095.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116322533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-147TCP domain protein 12