PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10018723m | ||||||||
Common Name | EUTSA_v10018723mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | HSF | ||||||||
Protein Properties | Length: 376aa MW: 42601.9 Da PI: 4.6306 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 106.1 | 2.8e-33 | 18 | 110 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSS.SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkeliswseng.nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl+k ye+++d++++++isws+ng nsfv++d++ f+ ++LpkyFkhsn++SF+RQLn+YgF+kv+ ++ weF+++ F +g+k+ll Thhalv10018723m 18 FLRKCYEMVDDSSTDSVISWSSNGdNSFVISDTTLFSVQLLPKYFKHSNLSSFIRQLNIYGFRKVDADR---------WEFANDGFVRGQKDLL 102 9********************77769****************************************999.........**************** PP XXXXXXXX CS HSF_DNA-bind 95 ekikrkks 102 +++ r+k+ Thhalv10018723m 103 KNVIRRKN 110 **999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.8E-34 | 10 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.85E-32 | 13 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.7E-54 | 14 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.2E-28 | 18 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.6E-19 | 18 | 41 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.6E-19 | 57 | 69 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 58 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.6E-19 | 70 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MVKSADGVGS SSSSVAPFLR KCYEMVDDSS TDSVISWSSN GDNSFVISDT TLFSVQLLPK 60 YFKHSNLSSF IRQLNIYGFR KVDADRWEFA NDGFVRGQKD LLKNVIRRKN VQSSDESKSV 120 YKQETTTDAS QEKPEKSGLW KEVDVLKGDK NALAQELIKV RQYQEITDTK MLNLKDRVQG 180 MEESQQEMLS FLVMVMQNPS LLVQLLQPKE NNWRKAEGAT ILEEVTDEGE SNSRGLPLVT 240 YHQTPSEGTA KSSSKEINDF LRNADMLKFC LDENHVPLII PDLYDDGAWE KLLLLSPSKK 300 KKKSNVKKGV KDDATLEVEE EEEDGTMEVD KSRTLELIQE EMEKQDDFEF GQLTPEKSRN 360 LEILTEQMGL LASNH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 6e-24 | 7 | 108 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 6e-24 | 7 | 108 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 6e-24 | 7 | 108 | 17 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 298 | 307 | KKKKKSNVKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10018723m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006391198.1 | 0.0 | heat stress transcription factor A-8 | ||||
Swissprot | Q9S7U5 | 0.0 | HSFA8_ARATH; Heat stress transcription factor A-8 | ||||
TrEMBL | V4KBM7 | 0.0 | V4KBM7_EUTSA; Uncharacterized protein | ||||
STRING | XP_006391198.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7045 | 26 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67970.1 | 0.0 | heat shock transcription factor A8 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10018723m |
Entrez Gene | 18007841 |