PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018723m
Common NameEUTSA_v10018723mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HSF
Protein Properties Length: 376aa    MW: 42601.9 Da    PI: 4.6306
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018723mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.12.8e-33181102102
                      HHHHHHHHHCTGGGTTTSEESSSS.SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
     HSF_DNA-bind   2 Flkklyeiledeelkeliswseng.nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                      Fl+k ye+++d++++++isws+ng nsfv++d++ f+ ++LpkyFkhsn++SF+RQLn+YgF+kv+ ++         weF+++ F +g+k+ll
  Thhalv10018723m  18 FLRKCYEMVDDSSTDSVISWSSNGdNSFVISDTTLFSVQLLPKYFKHSNLSSFIRQLNIYGFRKVDADR---------WEFANDGFVRGQKDLL 102
                      9********************77769****************************************999.........**************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  95 ekikrkks 102
                      +++ r+k+
  Thhalv10018723m 103 KNVIRRKN 110
                      **999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.8E-3410103IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.85E-3213108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-5414108IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-2818108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-191841IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-195769IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405882IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-197082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MVKSADGVGS SSSSVAPFLR KCYEMVDDSS TDSVISWSSN GDNSFVISDT TLFSVQLLPK  60
YFKHSNLSSF IRQLNIYGFR KVDADRWEFA NDGFVRGQKD LLKNVIRRKN VQSSDESKSV  120
YKQETTTDAS QEKPEKSGLW KEVDVLKGDK NALAQELIKV RQYQEITDTK MLNLKDRVQG  180
MEESQQEMLS FLVMVMQNPS LLVQLLQPKE NNWRKAEGAT ILEEVTDEGE SNSRGLPLVT  240
YHQTPSEGTA KSSSKEINDF LRNADMLKFC LDENHVPLII PDLYDDGAWE KLLLLSPSKK  300
KKKSNVKKGV KDDATLEVEE EEEDGTMEVD KSRTLELIQE EMEKQDDFEF GQLTPEKSRN  360
LEILTEQMGL LASNH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-24710817129Heat shock factor protein 1
5d5v_B6e-24710817129Heat shock factor protein 1
5d5v_D6e-24710817129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1298307KKKKKSNVKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018723m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391198.10.0heat stress transcription factor A-8
SwissprotQ9S7U50.0HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLV4KBM70.0V4KBM7_EUTSA; Uncharacterized protein
STRINGXP_006391198.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70452637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.10.0heat shock transcription factor A8