PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10018705m | ||||||||
Common Name | EUTSA_v10018705mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | MYB | ||||||||
Protein Properties | Length: 383aa MW: 42945.9 Da PI: 6.0849 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3.2e-17 | 42 | 89 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +v+ +G g W+t + + g++R++k+c++rw +yl Thhalv10018705m 42 KGAWTQEEDQKLIVYVQHHGEGGWRTLPDKAGLKRCGKSCRLRWANYL 89 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.8 | 9.3e-17 | 95 | 139 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg ++ eE++ ++++++ +G++ W++Iar++ gRt++++k++w+++ Thhalv10018705m 95 RGEFSHEEEDSIIELHAIHGNK-WSAIARRLA-GRTDNEIKNHWNTH 139 899*******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-23 | 33 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.598 | 37 | 89 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-29 | 39 | 136 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-12 | 41 | 91 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-15 | 42 | 89 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.22E-9 | 44 | 89 | No hit | No description |
PROSITE profile | PS51294 | 26.038 | 90 | 144 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-25 | 93 | 144 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-16 | 94 | 142 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-15 | 95 | 139 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.97E-11 | 97 | 140 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009625 | Biological Process | response to insect | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MIHHKPTIQN SSLLLSFPIF SHYNQESRMV RTPCCRAEGL KKGAWTQEED QKLIVYVQHH 60 GEGGWRTLPD KAGLKRCGKS CRLRWANYLR PDIKRGEFSH EEEDSIIELH AIHGNKWSAI 120 ARRLAGRTDN EIKNHWNTHI KKRLLKKGID PLTHKSLLDG AGKSSDHPET SLEEDDQKSN 180 NNKSSGSPSA RLLNRVASRL GKRINHSVLS DIIGSGGPLI SHITPPTSAS EREKSTSSSS 240 KPSPSNLLNN QNMNLDATSL SSSMFSDSSD SLMYENIFGD IEDMTGFSSR FLSDVVSHDD 300 EDFLMLDESC LENTLFMRDL TMILQGDKIE TKSFNDIHVT PLNEVDSFEG IDNYNCQDIT 360 SENILLSYDD DDENLASKSI RI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-27 | 40 | 144 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in glucosinolates biosynthesis. {ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10018705m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF371983 | 1e-137 | AF371983.2 Arabidopsis thaliana putative transcription factor MYB122 (MYB122) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006390468.1 | 0.0 | transcription factor MYB122 | ||||
Swissprot | Q9C9C8 | 1e-165 | MY122_ARATH; Transcription factor MYB122 | ||||
TrEMBL | V4K9M6 | 0.0 | V4K9M6_EUTSA; Uncharacterized protein | ||||
STRING | XP_006390468.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74080.1 | 1e-156 | myb domain protein 122 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10018705m |
Entrez Gene | 18008702 |