PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018677m
Common NameEUTSA_v10018677mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 395aa    MW: 44190.4 Da    PI: 7.2575
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018677mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.97.4e-27216275259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-.SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkvers.aedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK+ k ++ pr+YYrC+++ +Cpv+k+v+r+ ++d+++  +tYeg+H+h+
  Thhalv10018677m 216 NDGCQWRKYGQKTAKANPLPRAYYRCSMSsNCPVRKQVQRCgEDDTSAYMTTYEGNHDHP 275
                      8***************************99**********934578899**********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.8E-28200277IPR003657WRKY domain
PROSITE profilePS5081124.707210277IPR003657WRKY domain
SuperFamilySSF1182904.71E-24211277IPR003657WRKY domain
SMARTSM007746.6E-33215276IPR003657WRKY domain
PfamPF031065.2E-25216275IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MIKEAINSCV YPFDGVMAES DKVYDKLSAE SDKEVELDAT KAKVEKVREE NENLKLLLSR  60
ILTDYNSLQM HVSNVIRQQR EASMELDINS HDSFGVDISL RLGRSDMNIS KKEDKIEKIC  120
PDKISDDKKD GSDMKRSLLV LGLPIQSCET EQNMKLDNLS RDARNKNEEN KCGSSRKDFK  180
TARNVDRQEV LEGHEQPCLK KTRVCVKAPC EDPSINDGCQ WRKYGQKTAK ANPLPRAYYR  240
CSMSSNCPVR KQVQRCGEDD TSAYMTTYEG NHDHPLPMEA THMAAGTSAA ASLLQSGSSS  300
SSASLSYYFP FHHFSVSTTN SHPTVTLDLT RPNYLNQLPN YPLSSSSLSF SSSDRPSSSN  360
SHTLSFNGLR TQAPLSTYSQ MPRLSHQTKL SEQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-192152771474WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018677m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390964.10.0probable WRKY transcription factor 36
SwissprotQ9CAR41e-158WRK36_ARATH; Probable WRKY transcription factor 36
TrEMBLV4JSI60.0V4JSI6_EUTSA; Uncharacterized protein
STRINGXP_006390964.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139131825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69810.11e-147WRKY DNA-binding protein 36
Publications ? help Back to Top
  1. Yang Y, et al.
    UVR8 interacts with WRKY36 to regulate HY5 transcription and hypocotyl elongation in Arabidopsis.
    Nat Plants, 2018. 4(2): p. 98-107
    [PMID:29379156]