PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018663m
Common NameEUTSA_v10018663mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family CO-like
Protein Properties Length: 400aa    MW: 45176.8 Da    PI: 5.8635
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018663mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box253.9e-081457340
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     +r C+ + + +++++C  ++ +lC++C  + H+       H++v
  Thhalv10018663m 14 ARACDSCVKRRARWYCAADDAFLCHSCDGSVHSAnplarrHERV 57
                     578*****************************657888888876 PP
2CCT68.51.8e-23350393144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Thhalv10018663m 350 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 393
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.0E-101259IPR000315B-box-type zinc finger
PROSITE profilePS5011910.7511259IPR000315B-box-type zinc finger
PfamPF006431.7E-61457IPR000315B-box-type zinc finger
CDDcd000211.20E-81559No hitNo description
PfamPF062035.1E-18350392IPR010402CCT domain
PROSITE profilePS5101716.083350392IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MMKSLANAVG GKTARACDSC VKRRARWYCA ADDAFLCHSC DGSVHSANPL ARRHERVRLK  60
SSSSGKHRHA SSSPPHRATW HQGFTRKART PRGGKKSHTM VFQDLVPVMS SEDQSYEVED  120
QLIFQVPVLN PMVEEQCVNE SMETKIEFPM MPLCFKSSDE EDENAESCLN GLFPTDMELA  180
QFTADVETLL GGGIEREIHD MEELGLGEML KIEHEEEEVA TREVCDLNDA DDETSPFEIS  240
FDYEYSNKTA SEEEGEEEKE DVIKNMTGVK VNEMSCTVKE EKKENVPMLR LDYQAVISTW  300
GGQGTPWTAL EPPEIDLDML CCSPNSTAHQ HHNHFHGLGL RMGDAGDGGR EARVSRYREK  360
RRTRLFSKKI RYEVRKLNAE KRPRMKGRFV KRSSIAAAH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1360376RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018663m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391130.10.0zinc finger protein CONSTANS-LIKE 6
SwissprotQ8LG760.0COL6_ARATH; Zinc finger protein CONSTANS-LIKE 6
TrEMBLV4MB410.0V4MB41_EUTSA; Uncharacterized protein
STRINGXP_006391130.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]