PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10018638m | ||||||||
Common Name | EUTSA_v10018638mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | SBP | ||||||||
Protein Properties | Length: 411aa MW: 46262.5 Da PI: 8.061 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.7 | 5.9e-42 | 132 | 207 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls k+yh+rh+vCe+hsk++vv+vsg+eqrfCqqCsrfh lsefD++krsCrrrLa+hnerrrk++ Thhalv10018638m 132 CQVYGCNMDLSFSKDYHKRHRVCETHSKTSVVIVSGIEQRFCQQCSRFHFLSEFDDGKRSCRRRLAGHNERRRKPS 207 **************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.5E-33 | 128 | 193 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.573 | 129 | 206 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.28E-39 | 130 | 209 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.6E-32 | 132 | 205 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MDSWSYGRSV FLENGTVLPS DSFAQSRKAM AGYEQRLSNE FENDDDVLMS HMAGKSNGFS 60 AVSISKMASS SCLAPSSLLP VEEDEEENQS SSSKLSRIDF KVRSFLDYEN DGTSSRAKKT 120 RASNLCPQNP LCQVYGCNMD LSFSKDYHKR HRVCETHSKT SVVIVSGIEQ RFCQQCSRFH 180 FLSEFDDGKR SCRRRLAGHN ERRRKPSFYF LPGKRHKLLR TSQGNKFLEA SSVNDFSLVL 240 PEAFPGNFLY RVTDEQDHCA SRLVSFKDEP TCSMFPAIAQ NNSRRIYESK ARIYSPEASG 300 VSSIWDLHEA APRSTCALSL LSAQSQQHFS ETPSPNTAFS ITKPNQNLNQ MQPLWMDPGK 360 TSSVSSSRNG KGSSTVDLLQ LSSHLQRIEQ QRNITDEVKQ EYNELYFPSS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-30 | 131 | 205 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10018638m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006391054.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_024007394.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_024007399.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
Swissprot | Q94JW8 | 0.0 | SPL6_ARATH; Squamosa promoter-binding-like protein 6 | ||||
TrEMBL | V4JSQ4 | 0.0 | V4JSQ4_EUTSA; Uncharacterized protein | ||||
STRING | XP_006391054.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9275 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 1e-179 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10018638m |
Entrez Gene | 18008246 |
Publications ? help Back to Top | |||
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