PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018514m
Common NameEUTSA_v10018514mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 460aa    MW: 49732.3 Da    PI: 9.6368
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018514mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.4e-05207229223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                       C+ Cg++F+  ++L+ H+ + H
  Thhalv10018514m 207 ACSQCGEVFPKLESLELHQAVrH 229
                      6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280206229IPR007087Zinc finger, C2H2
PROSITE profilePS501578.808206234IPR007087Zinc finger, C2H2
SuperFamilySSF563996.91E-22231455No hitNo description
Gene3DG3DSA:3.90.228.104.6E-14233455IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MALLTFLPEN AEPPKQTPPP SKRKKRENPT DQTQPQKPRK PQKPKKPAPQ KQPSSWDQIK  60
NLLTCKQIEG SRVHDPSKNS QSGPSMTTHL SPSKLSSSCS SICSFRDVAH GNTRVVHRAD  120
HSPDVANSAT PADSETRLLT RKPGQHGSSS SSRSLISGSA RSNGSGSYTS SSTTSFRAMQ  180
FRKLSGCYEC HMIVDPSRYP ISPRVCACSQ CGEVFPKLES LELHQAVRHA VSELGPEDSG  240
RNIVEIIFKS SWLKKDSPIC KIERILKVHN TQRTIQRFED CRDAVKARAL QTTRKDARCA  300
ADGNELLRFH CTTLTCSLGS RGSSSLCSNL PTCGVCNVIR HGFQGKSGAG GATGGVRTTA  360
SSGRADDLLR CSDDARRVML VCRVIAGRVK RVDLPADSPA TEQKSPAEDN LAVGVSSSSG  420
AFDSVAVNAG VYSNLEELVV YNPRAILPCF VVIYKVLES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018514m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529750.0AK352975.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-C24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390280.10.0uncharacterized protein LOC18008599
TrEMBLE4MWS80.0E4MWS8_EUTHA; mRNA, clone: RTFL01-19-C24
TrEMBLV4M8V40.0V4M8V4_EUTSA; Uncharacterized protein
STRINGXP_006390280.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.10.0C2H2-like zinc finger protein