PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018331m
Common NameEUTSA_v10018331mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ARF
Protein Properties Length: 583aa    MW: 63467.9 Da    PI: 5.1361
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018331mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.88.6e-23118219199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+ltpsd+++ g +++p+ +a++          ++ +  +l ++d +g  W++++iyr++++r++lt+GW++Fv++++L +gD+vvF++  +
  Thhalv10018331m 118 FAKILTPSDANNGGGFSVPRYCADSVfpsldfqADPPVQ--KLFITDIHGVLWDFRHIYRGTPRRHLLTTGWSKFVNSKKLIAGDSVVFMR--K 207
                      89*********************999*****95444444..8************************************************4..4 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      s   l+++v+r+
  Thhalv10018331m 208 SPDALFIGVRRA 219
                      666689999986 PP

2Auxin_resp87.62.4e-29280362183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+++a+++ +FevvY+P a++s+Fvv++e+ve+++ + +++G+R+kma+etedss++++ +G+v+++ + ++  W++S+W++L+
  Thhalv10018331m 280 AINKAAQGLPFEVVYYPTAGWSDFVVRAEDVEASMAIFWTPGTRVKMAMETEDSSRITWfQGIVSSTFQ-ETGPWRGSPWKQLQ 362
                      67899******************************************************9999999888.8889********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.15E-29110222IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-32110219IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-19118220IPR003340B3 DNA binding domain
PROSITE profilePS5086312.661118220IPR003340B3 DNA binding domain
CDDcd100171.78E-19118214No hitNo description
PfamPF023621.7E-20118219IPR003340B3 DNA binding domain
PfamPF065073.7E-24280362IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MSPPSANADV LREVDPRIWR ACAGASVQIP TLYSRVYYFP QGHVEHCCAS SVISSFPSST  60
SPVPCIVSSI ELLADPITDE VFAHLFLQPI APDQFMPPNF SRFGRYESED EENKVVTFAK  120
ILTPSDANNG GGFSVPRYCA DSVFPSLDFQ ADPPVQKLFI TDIHGVLWDF RHIYRGTPRR  180
HLLTTGWSKF VNSKKLIAGD SVVFMRKSPD ALFIGVRRAP ISNSGGTSFY GGAGAGAGGD  240
EFSSYYQSSV VAAKDEDPSV KKGFRRTGRG KLTTEAVAEA INKAAQGLPF EVVYYPTAGW  300
SDFVVRAEDV EASMAIFWTP GTRVKMAMET EDSSRITWFQ GIVSSTFQET GPWRGSPWKQ  360
LQITWDEPEI LQNVKRVNPW QVEIVANSSQ LHAAFPPTKR LKFPHSAGGL LSGEEGDHLY  420
SQRGLLSSVA PAGDPSPYMF PYTTFPAGMQ GARHYEFGSF NPTGFIGENP PQLCNNNFFS  480
PLPGLGKVST EMNFGSPPSE DLSPNSNTTN LSSGNDPVGN RGPTSARTNS FQLFGKIINV  540
QEPSESGLAE SGLYEEDGSK ESSDNEVLNE TQLSLTHGPQ GM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-641439051395Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018331m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390047.10.0auxin response factor 17
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLV4KJ900.0V4KJ90_EUTSA; Auxin response factor
STRINGXP_006390047.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.10.0auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]