PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thhalv10018331m | ||||||||
Common Name | EUTSA_v10018331mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 583aa MW: 63467.9 Da PI: 5.1361 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.8 | 8.6e-23 | 118 | 219 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+ltpsd+++ g +++p+ +a++ ++ + +l ++d +g W++++iyr++++r++lt+GW++Fv++++L +gD+vvF++ + Thhalv10018331m 118 FAKILTPSDANNGGGFSVPRYCADSVfpsldfqADPPVQ--KLFITDIHGVLWDFRHIYRGTPRRHLLTTGWSKFVNSKKLIAGDSVVFMR--K 207 89*********************999*****95444444..8************************************************4..4 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 s l+++v+r+ Thhalv10018331m 208 SPDALFIGVRRA 219 666689999986 PP | |||||||
2 | Auxin_resp | 87.6 | 2.4e-29 | 280 | 362 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a+++a+++ +FevvY+P a++s+Fvv++e+ve+++ + +++G+R+kma+etedss++++ +G+v+++ + ++ W++S+W++L+ Thhalv10018331m 280 AINKAAQGLPFEVVYYPTAGWSDFVVRAEDVEASMAIFWTPGTRVKMAMETEDSSRITWfQGIVSSTFQ-ETGPWRGSPWKQLQ 362 67899******************************************************9999999888.8889********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.15E-29 | 110 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.6E-32 | 110 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.6E-19 | 118 | 220 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.661 | 118 | 220 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.78E-19 | 118 | 214 | No hit | No description |
Pfam | PF02362 | 1.7E-20 | 118 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.7E-24 | 280 | 362 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010208 | Biological Process | pollen wall assembly | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 583 aa Download sequence Send to blast |
MSPPSANADV LREVDPRIWR ACAGASVQIP TLYSRVYYFP QGHVEHCCAS SVISSFPSST 60 SPVPCIVSSI ELLADPITDE VFAHLFLQPI APDQFMPPNF SRFGRYESED EENKVVTFAK 120 ILTPSDANNG GGFSVPRYCA DSVFPSLDFQ ADPPVQKLFI TDIHGVLWDF RHIYRGTPRR 180 HLLTTGWSKF VNSKKLIAGD SVVFMRKSPD ALFIGVRRAP ISNSGGTSFY GGAGAGAGGD 240 EFSSYYQSSV VAAKDEDPSV KKGFRRTGRG KLTTEAVAEA INKAAQGLPF EVVYYPTAGW 300 SDFVVRAEDV EASMAIFWTP GTRVKMAMET EDSSRITWFQ GIVSSTFQET GPWRGSPWKQ 360 LQITWDEPEI LQNVKRVNPW QVEIVANSSQ LHAAFPPTKR LKFPHSAGGL LSGEEGDHLY 420 SQRGLLSSVA PAGDPSPYMF PYTTFPAGMQ GARHYEFGSF NPTGFIGENP PQLCNNNFFS 480 PLPGLGKVST EMNFGSPPSE DLSPNSNTTN LSSGNDPVGN RGPTSARTNS FQLFGKIINV 540 QEPSESGLAE SGLYEEDGSK ESSDNEVLNE TQLSLTHGPQ GM* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 6e-64 | 14 | 390 | 51 | 395 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Thhalv10018331m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006390047.1 | 0.0 | auxin response factor 17 | ||||
Swissprot | Q84WU6 | 0.0 | ARFQ_ARATH; Auxin response factor 17 | ||||
TrEMBL | V4KJ90 | 0.0 | V4KJ90_EUTSA; Auxin response factor | ||||
STRING | XP_006390047.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G77850.1 | 0.0 | auxin response factor 17 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thhalv10018331m |
Entrez Gene | 18008417 |