PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018262m
Common NameEUTSA_v10018262mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family FAR1
Protein Properties Length: 635aa    MW: 74133.2 Da    PI: 7.3146
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018262mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.11.1e-261297291
             FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
                     fY++YAk+vGF + k +s++s+ ++e+++++f C ++g++++++++     ++ra+ ++gCka+++vk++ dgkw+v+++++eHnHel p
  Thhalv10018262m 12 FYKDYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGSKQQSDDA----INPRASPKIGCKASMHVKRRPDGKWYVYSFVKEHNHELLP 97
                     9****************************************99887....9************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-241297IPR004330FAR1 DNA binding domain
PfamPF105519.1E-28211303IPR018289MULE transposase domain
PROSITE profilePS5096610.472480516IPR007527Zinc finger, SWIM-type
PfamPF044347.8E-9480514IPR007527Zinc finger, SWIM-type
SMARTSM005751.7E-7491518IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MEFDTHEDAY LFYKDYAKSV GFGTAKLSSR RSRASKEFID AKFSCIRYGS KQQSDDAINP  60
RASPKIGCKA SMHVKRRPDG KWYVYSFVKE HNHELLPEQA HFFRSHRNTE PVNPDSRLRR  120
KKNNPLAACK HLSAYHDLGF LDGYMRNQHD KGRRLVIGNG DAQILLEFLM RLQEENPKFF  180
FAVDFSEDHL LRNVFWVDAK GIEDYKSFSD VVSFDTTYLV SKYKLPLVLF VGVNHHVQPV  240
LLGCGLIADD TVYTYVWLMQ SWLLAMGGST PKVMLSDQNN SIKAAIAAVL PETRHCYCLW  300
HVLDRLPRNL DYWSMWQDTF MKKLFKCIYR SWSEEEFDKR WLKLIDKFHL RDVQWMRSLY  360
EERNFWAPTF MRGVTFAGLS TRNRSESVNS LFDRYVQAET SLKEFLEGYG LMLEDRYEEE  420
AKADFDAWHE APELKSPSPF EKQMLLVYTH EIFRKFQSRF WESEEGTTYS VKDFEDDQKY  480
LVDWNESKTD IHCSCRCFEY KGYLCRHAIV VLQMSGVFTI PINYVLQRWT NAARNRHQIS  540
GNLELVQSNI RRFNDLCRRA IILGEEGSLS QESYDVAMFA MKEAFKQCAI KLNTIEHPAM  600
CGEPVQEENQ YGSTSKQIGP EPNIHAEPGL ARSS*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018262m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0099780.0AC009978.3 Genomic sequence for Arabidopsis thaliana BAC T23E18 from chromosome I, complete sequence.
GenBankAC0123940.0AC012394.3 Arabidopsis thaliana chromosome 1 BAC F15M4 genomic sequence, complete sequence.
GenBankAK2214060.0AK221406.1 Arabidopsis thaliana mRNA for putative phytochrome A signaling protein, complete cds, clone: RAFL25-49-E06.
GenBankBT0104560.0BT010456.1 Arabidopsis thaliana far-red impaired response protein -related (At1g76320) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024009362.10.0LOW QUALITY PROTEIN: protein FAR1-RELATED SEQUENCE 4
SwissprotQ6NQJ70.0FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBLV4M8Q60.0V4M8Q6_EUTSA; Uncharacterized protein
STRINGXP_006390210.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.10.0FAR1-related sequence 4
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]