PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018251m
Common NameEUTSA_v10018251mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family STAT
Protein Properties Length: 650aa    MW: 73864.8 Da    PI: 5.4605
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018251mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT181.11.6e-562213321113
             STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkk 94 
                      ldvvl+na+gqpv+kdvevvasLly+d+ lv +ks+++eapLL+sy+Gv fs+ drp+kll+Gr+sfklkisqLsskcdnrLf+ikf+ip+ k+
  Thhalv10018251m 221 LDVVLSNAIGQPVHKDVEVVASLLYSDT-LVEAKSSETEAPLLVSYEGVVFSADDRPIKLLNGRSSFKLKISQLSSKCDNRLFCIKFQIPNAKD 313
                      8**************************9.888999*********************************************************** PP

             STAT  95 ypfleavskpirCisrsrn 113
                      ypfl+a+++pirCis s +
  Thhalv10018251m 314 YPFLQALTNPIRCISISPK 332
                      ***************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.2004.5E-524150IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF498992.53E-729165IPR013320Concanavalin A-like lectin/glucanase domain
CDDcd103386.44E-60552649No hitNo description
Gene3DG3DSA:3.30.505.101.6E-8559616IPR000980SH2 domain
SuperFamilySSF555503.23E-10560645IPR000980SH2 domain
PROSITE profilePS500019.529563649IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MAGVSAIEMN KYSLLKDFNV DVEVEDEEYE TFSLCFWVYL LNSTTFPSTI IKQVHSKMSV  60
SAPFLVLDEY KKMMLLPLTL LHKEAPDPVD TSSWTQVPNV STKSHFPLEK WVHVGCQVSR  120
NYVRLLIDGE IVGEQSLTSL LIKNTNHECL RKISLFSVGG DGYSVQGFIQ FAEVLPASCH  180
VEHHYMKDPP LWLSVDKSSS SGIELDDDGV WKASCREMFS LDVVLSNAIG QPVHKDVEVV  240
ASLLYSDTLV EAKSSETEAP LLVSYEGVVF SADDRPIKLL NGRSSFKLKI SQLSSKCDNR  300
LFCIKFQIPN AKDYPFLQAL TNPIRCISIS PKRLTLIDHH PLSTESPNIL HNTSSVKRAR  360
FCKESVSGSE ESYEQFDNGN DVSMHHEEDN SSTDSENSEM RDLVLMRYTI SDSTIFRYCL  420
GNLTERSLLL KEITNNSSDD EVLEFASQIS LYSGCSHHCY QINMAKKLID EGTNVWILIS  480
RNNQHVHWDN VVYEIEEHFM RISKCSSRSL THQDFEILRR ISGCYEYVTQ ENFEKMWCWL  540
FPVASSISRG LINGMWRSSS PKWVEGFITK EEAEHSLQGQ EPGTFILRFP ISRSWPHPDA  600
GSLVVTYVGH GFTLHHKQLK IDNICESIER YTDAKLLQDM LLAEPELSR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018251m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2215320.0AK221532.1 Arabidopsis thaliana mRNA for Hypothetical protein, complete cds, clone: RAFL07-69-D06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006389977.10.0SH2 domain-containing protein B
SwissprotQ56XZ10.0SHB_ARATH; SH2 domain-containing protein B
TrEMBLV4KJ310.0V4KJ31_EUTSA; Uncharacterized protein
STRINGXP_006389977.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52052645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.20.0SH2 domain protein B
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]