PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018234m
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HD-ZIP
Protein Properties Length: 667aa    MW: 74583.1 Da    PI: 6.47
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018234mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.24.5e-2199154156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      r+k +++t++q++ +e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Thhalv10018234m  99 RKKYHRHTTDQIRHMEALFKETPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 154
                      7999************************************************9877 PP
2START122.94e-392564061129
                      HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
            START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                      e+a++a+ el+k+a++++p+W +s+    e++n+de+l++f++++        +s+ea+r++g+v+m++++l ++++d++ qW+ ++a    ka
  Thhalv10018234m 256 EIANRATLELQKMATSDQPLWLRSVetgrEILNYDEYLKEFPQAHQassfpgrKSIEASRDVGIVFMDAHKLAQSFMDVG-QWKDMFAclisKA 348
                      578999************************************9999**********************************.************* PP

                      EEEEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEE CS
            START  80 etlevissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvS 129
                      +t++vi++g       ga+qlm+ e+q+l+p+vp R+++fvR++rql+ ++w+ivdvS
  Thhalv10018234m 349 ATVDVIQQGegpsridGAIQLMFGEMQLLTPVVPtREVYFVRSCRQLSPDKWAIVDVS 406
                      ********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-2284150IPR009057Homeodomain-like
SuperFamilySSF466897.1E-2090157IPR009057Homeodomain-like
PROSITE profilePS5007117.81596156IPR001356Homeobox domain
SMARTSM003899.6E-1898160IPR001356Homeobox domain
PfamPF000462.3E-1899154IPR001356Homeobox domain
CDDcd000862.40E-16103154No hitNo description
PROSITE patternPS000270131154IPR017970Homeobox, conserved site
PROSITE profilePS5084822.202247406IPR002913START domain
CDDcd088757.50E-72251433No hitNo description
PfamPF018522.2E-33256406IPR002913START domain
SMARTSM002345.7E-40256479IPR002913START domain
SuperFamilySSF559611.41E-15256434No hitNo description
SuperFamilySSF559615.49E-15452652No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MSMAVEMSSK QPTKDFFSSP ALSLSLAGIF RNASPGSTNP EEDFSGRRLA DDEDRTVEMS  60
SENSGPTRSR SEEDLEGTEE EDEEEEDTGA GNKGNKRKRK KYHRHTTDQI RHMEALFKET  120
PHPDEKQRQQ LSKQLGLAPR QVKFWFQNRR TQIKAIQERH ENSLLKAELE KLREENKAMR  180
ESFSKANSCC PNCGGPDDLH LENSKLKAEL DKLRAALGRT PYPLQASCSE DQQHRLLGSH  240
DFYSGVFALE KSRIVEIANR ATLELQKMAT SDQPLWLRSV ETGREILNYD EYLKEFPQAH  300
QASSFPGRKS IEASRDVGIV FMDAHKLAQS FMDVGQWKDM FACLISKAAT VDVIQQGEGP  360
SRIDGAIQLM FGEMQLLTPV VPTREVYFVR SCRQLSPDKW AIVDVSPIFR SCVNTGLAFG  420
ARHWVATLQL QCERLVFFMA TNVPTKDSLG LHQWTKITTK TGQDMRVSSR KNLHDPGEPT  480
GVIVCASSSL WLPVSPTLLF DFFRDEARRH EWDTLSSGAH VQSIASLSKG QDRGNSVSIQ  540
TVKSREKSIW VLQDSCTNSY ESVVVYAPVD INTTQLVIAG HDPSNIQILP SGFSIIPDGV  600
ESRPLVITST REDRNTQGGS LLTLALQTLI NPSPAAKLNM ESVESVTNLV SVTLHNIKRS  660
LQIEDC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196100RKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018234m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3602940.0AF360294.1 Arabidopsis thaliana putative homeobox protein GLABRA2 (At1g79840) mRNA, complete cds.
GenBankBT0019560.0BT001956.1 Arabidopsis thaliana clone U09291 putative homeobox protein GLABRA2 (At1g79840) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006389720.20.0LOW QUALITY PROTEIN: homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A178WBY60.0A0A178WBY6_ARATH; GL2
STRINGAT1G79840.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123702731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]