PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thhalv10017903m | ||||||||
Common Name | EUTSA_v10017903mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 200aa MW: 22594.1 Da PI: 6.36 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.8 | 4.3e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+k+Cv+apyf++eq +++fa++h++FGasn +k+l++lp e+r +a+ +++yeA+ar++dP+yG+v++i++lqqq+ +l+++ Thhalv10017903m 7 PCGACKFLRRKCVKGCVFAPYFCHEQgASHFAAIHQVFGASNASKVLSNLPMEDRYEAAITIYYEAQARLQDPIYGCVSHIFSLQQQVVNLQTQ 100 7*************************89****************************************************************** PP DUF260 94 lallkee 100 l+ lk++ Thhalv10017903m 101 LEILKQQ 107 ***9997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.158 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.9E-37 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 200 aa Download sequence Send to blast |
MTGSGSPCGA CKFLRRKCVK GCVFAPYFCH EQGASHFAAI HQVFGASNAS KVLSNLPMED 60 RYEAAITIYY EAQARLQDPI YGCVSHIFSL QQQVVNLQTQ LEILKQQAAQ SMMATDFPSI 120 ENPNYHRDTK PTHLQESQDL YRPHNNHHQD GSMETERYSD LNYIMTSYFE LEQHLNTFNP 180 HDHGGNDILS SSFGYISYS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-35 | 3 | 102 | 7 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-35 | 3 | 102 | 7 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Thhalv10017903m |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB473848 | 1e-152 | AB473848.1 Arabidopsis thaliana ASL15 mRNA for ASYMMETRIC LEAVES2-like 15 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006411501.1 | 1e-150 | LOB domain-containing protein 17 | ||||
Swissprot | Q9SLB6 | 1e-98 | LBD17_ARATH; LOB domain-containing protein 17 | ||||
TrEMBL | V4M9C7 | 1e-149 | V4M9C7_EUTSA; Uncharacterized protein | ||||
STRING | XP_006411501.1 | 1e-149 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42440.1 | 2e-90 | LBD family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thhalv10017903m |
Entrez Gene | 18027716 |
Publications ? help Back to Top | |||
---|---|---|---|
|