PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10017870m | ||||||||
Common Name | EUTSA_v10017870mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | C2H2 | ||||||||
Protein Properties | Length: 212aa MW: 23998.2 Da PI: 9.6188 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 8.7e-05 | 48 | 70 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Thhalv10017870m 48 YTCSFCRRDFKSAQALGGHMNVH 70 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.73E-6 | 45 | 74 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.2E-4 | 46 | 73 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.094 | 48 | 75 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 50 | 70 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MKRTHLASFS SRNKTQEDVE DTNGDNRISM NHYKNYEAGL IPWPPKNYTC SFCRRDFKSA 60 QALGGHMNVH REDRAKLRQI PSWIFEPHHQ IPISNPNPKL NSSSSSTPPD HLEPSLAIQR 120 YKTTPFSSTR FGLLENTTSY GGLMMEREKS KSNVCGREIK KSGMVACHTP RSEISRGDMM 180 NKRDEVTGLE LGMGLINTKQ VLDLELRLGY L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 4e-12 | 43 | 70 | 2 | 29 | superman protein |
2l1o_A | 4e-12 | 43 | 70 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may regulate cell division and growth. {ECO:0000269|Ref.4}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10017870m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006411499.1 | 1e-159 | zinc finger protein 11 | ||||
Swissprot | Q9SLB8 | 1e-114 | ZFP11_ARATH; Zinc finger protein 11 | ||||
TrEMBL | V4MCN6 | 1e-158 | V4MCN6_EUTSA; Uncharacterized protein | ||||
STRING | XP_006411499.1 | 1e-158 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9575 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42410.1 | 1e-109 | zinc finger protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10017870m |
Entrez Gene | 18027714 |