PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10017865m | ||||||||
Common Name | EUTSA_v10017865mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | NF-YB | ||||||||
Protein Properties | Length: 103aa MW: 11529.2 Da PI: 4.5035 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 44.5 | 3.8e-14 | 10 | 96 | 7 | 88 |
NF-YB 7 flPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 +lP+a v r++k l + + i k+a e + fi +++s a+d c+ +r+ti++dd++ al ++ f +++eplk+ l+ Thhalv10017865m 10 ELPLAIVRRVVKDKLSEcspdyDVSIHKEALVAFSESARIFIHYLSSTANDFCKDSRRQTIKADDVFKALEEMDFGEFLEPLKASLE 96 69**********999652222356899********************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 1.9E-10 | 10 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 5.8E-27 | 10 | 97 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.37E-23 | 11 | 98 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MESEKVVVDE LPLAIVRRVV KDKLSECSPD YDVSIHKEAL VAFSESARIF IHYLSSTAND 60 FCKDSRRQTI KADDVFKALE EMDFGEFLEP LKASLEGCLQ VS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10017865m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT004083 | 1e-103 | BT004083.1 Arabidopsis thaliana clone RAFL15-10-G12 (R20802) putative CCAAT-binding transcription factor subunit (At2g27470) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024003731.1 | 2e-65 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | V4LKW8 | 4e-67 | V4LKW8_EUTSA; Uncharacterized protein | ||||
STRING | XP_006409732.1 | 6e-68 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12007 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 2e-61 | nuclear factor Y, subunit B11 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10017865m |
Entrez Gene | 18027841 |