PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10017825m
Common NameEUTSA_v10017825mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 185aa    MW: 21007.9 Da    PI: 9.1967
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10017825mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.26.1e-201257449
                     -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     ++   rqvtfskRr+g++KKA+EL +LC+ae  +++fs+ gk y y
  Thhalv10017825m 12 QDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPYSY 57
                     56778*************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-32160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.413161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-26172IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-19323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-231257IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MGRRKIKMEM VQDMNTRQVT FSKRRTGLFK KASELATLCN AELGIVVFSP GGKPYSYGKP  60
NLDAVTERFM REECEDSDDG DEEGRCGNNR PKLKKMNERL DFLKQEIEAE KKRGEKAQEK  120
LESAGEARFK KPIEKLTIGE LNEYRDKLQR VHGRIQGQAK NLHASSCLLL LSKDKTPANE  180
DLDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-15169169MEF2 CHIMERA
6byy_B5e-15169169MEF2 CHIMERA
6byy_C5e-15169169MEF2 CHIMERA
6byy_D5e-15169169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10017825m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410589.11e-133agamous-like MADS-box protein AGL29
SwissprotO647032e-96AGL29_ARATH; Agamous-like MADS-box protein AGL29
TrEMBLV4MAC21e-132V4MAC2_EUTSA; Uncharacterized protein
STRINGXP_006410589.11e-133(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.18e-91AGAMOUS-like 29
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]