PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10017791m
Common NameEUTSA_v10017791mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 301aa    MW: 33950.3 Da    PI: 7.1685
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10017791mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.6e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l+d+++  G+g +W + +++ g++R++k+c++rw++yl
  Thhalv10017791m 14 RGPWSPEEDAKLKDYIENQGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding42.12e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd+++  +++  G++ W+ Ia++++ gRt++++k++w++
  Thhalv10017791m  69 GDFTEEEDKIICGLFASIGSR-WSVIAAHLQ-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.345962IPR017930Myb domain
SuperFamilySSF466893.84E-2611109IPR009057Homeodomain-like
SMARTSM007174.6E-101364IPR001005SANT/Myb domain
PfamPF002495.4E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-241569IPR009057Homeodomain-like
CDDcd001671.46E-61662No hitNo description
PROSITE profilePS5129421.47563117IPR017930Myb domain
SMARTSM007176.0E-1167115IPR001005SANT/Myb domain
PfamPF002492.4E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-2370117IPR009057Homeodomain-like
CDDcd001678.42E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009785Biological Processblue light signaling pathway
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE NQGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIRHGD FTEEEDKIIC GLFASIGSRW SVIAAHLQGR TDNDIKNYWN TKLKKKLLAT  120
MAPPPPPPPP HHHLAIASSS ASSPSSSSSS SHYNMINNLL PYNPSIATNQ LNTPHQGMMM  180
TMMGQQQQLL YQENMGSMVN FPNINNLIMS HQEDIQKQST NKGIMLLSDV RSGSSTTSTV  240
PMVKMEYHDH DHHHEEEERS MEDYGMEEIK QLISSSCTSS SSNSLWFDEN KTEDKFMLYY  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-22141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10017791m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195770.0AY519577.1 Arabidopsis thaliana MYB transcription factor (At2g36890) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410862.10.0transcription factor RAX2
SwissprotQ9SJL71e-144RAX2_ARATH; Transcription factor RAX2
TrEMBLV4LP070.0V4LP07_EUTSA; Uncharacterized protein
STRINGXP_006410862.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.11e-129MYB family protein
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]