PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10017754m | ||||||||
Common Name | EUTSA_v10017754mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 214aa MW: 24510.2 Da PI: 8.7025 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.9 | 1.7e-20 | 17 | 62 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 e sn qvtfskR+ g++KKA+EL++LC++e+ v++fs++ k++ + Thhalv10017754m 17 EKASNLQVTFSKRKCGLFKKASELCTLCGVEIGVLVFSPSRKVFSF 62 67899*************************************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.8E-27 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.455 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.99E-32 | 7 | 77 | No hit | No description |
SuperFamily | SSF55455 | 3.66E-24 | 7 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-16 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-22 | 15 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-16 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-16 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MARVYRGRRK LPMVKMEKAS NLQVTFSKRK CGLFKKASEL CTLCGVEIGV LVFSPSRKVF 60 SFGNPDIKSV INRFENYLHG PFMFFEDGPN TTIQDLNSQL TQELAKLKVE KEKKKFLDKI 120 RNKREEIEKW WENPPNQLDL PQTTCLISVL ENLRMELGTQ PSQPSQAIVP QNCYGGSYNN 180 IFGGDNIDLF DQGIMFDVNA LNYDPNMVIP NYGN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10017754m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006409893.2 | 1e-159 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 1e-60 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | V4NWU7 | 1e-157 | V4NWU7_EUTSA; Uncharacterized protein (Fragment) | ||||
STRING | XP_006409893.1 | 1e-158 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16574 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-57 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10017754m |
Entrez Gene | 18028068 |
Publications ? help Back to Top | |||
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