PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10017751m

Common Name

EUTSA_v10017751mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bHLH

Protein Properties

Length: 299aa MW: 34282.8 Da PI: 4.9473

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10017751m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.8	7.8e-08	175	219	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r RR+ri ++ +eL +l+P +Kl+ ae+ + A +Y+k Lq Thhalv10017751m 175 SMAARERRRRIAEKTHELAKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 219 678899***************86.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.2E-11	167	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.779	169	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-10	172	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-9	175	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-5	175	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.29E-4	191	222	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MSSMDCLSHF FNWDPPIQLQ DCFIPDMDTI LPETDSFFFQ SQPQLQFHQP LFQEEAPSQT 60 RLELNHFDAF CDQFLPPQET SLPYPKAEIF DEIHNLDSFL PTPKRQKLIN SSYHCNTNNH 120 CPSPNPNFFN PYDDLDFVPE ASIFPEFLVP DYSLTFKVGR GDQGDNKKPT LSSQSMAARE 180 RRRRIAEKTH ELAKLIPGGQ KLNTAEMFQA AAKYVKFLQS QVGILQMMQA TKKTHSTNVE 240 IETRVLLDSQ AIQEKLSMEE VCLVPCEMVR DLTTEESVWR NPKISRQINK LLSTDLAS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10017751m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006410635.2	0.0	transcription factor bHLH53
Swissprot	Q84RD0	1e-157	BH053_ARATH; Transcription factor bHLH53
TrEMBL	V4MHR8	0.0	V4MHR8_EUTSA; Uncharacterized protein
STRING	XP_006410635.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4547	25	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34820.1	1e-141	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thhalv10017751m
Entrez Gene	18027051

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]