PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10017567m
Common NameEUTSA_v10017567mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HD-ZIP
Protein Properties Length: 182aa    MW: 21489.4 Da    PI: 8.4303
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10017567mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.6e-1865119357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      k+ ++t+eql+ Le+ F+++ +++ +++ +L+++lg++ +q+ vWFqNr+a++k+
  Thhalv10017567m  65 KKKKMTSEQLKLLERSFQEEIKLDPNRKMKLSRELGIQPKQIAVWFQNRKARWKN 119
                      56789************************************************95 PP

2HD-ZIP_I/II108.25.8e-3564155192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      ekk+++++eq+klLE+sF+ee kL+p+rK++l+reLg+qp+q+avWFqnr+AR+k+kqlE  ye+L++++d +++e+e L++e  +L++ ++
  Thhalv10017567m  64 EKKKKMTSEQLKLLERSFQEEIKLDPNRKMKLSRELGIQPKQIAVWFQNRKARWKNKQLELLYESLRQEFDVVSREKELLQEELIQLKSMIR 155
                      69**************************************************************************************8876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.35E-1845122IPR009057Homeodomain-like
PROSITE profilePS5007115.96960120IPR001356Homeobox domain
SMARTSM003893.1E-1465124IPR001356Homeobox domain
CDDcd000863.02E-1365121No hitNo description
PfamPF000461.9E-1565119IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.2E-1966126IPR009057Homeodomain-like
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEYWSSPFIN GDSSSIFNYP FHSFDHFSGT MVETQGVPLH EHHVPPEMVG SSYGEASNNI  60
NGYEKKKKMT SEQLKLLERS FQEEIKLDPN RKMKLSRELG IQPKQIAVWF QNRKARWKNK  120
QLELLYESLR QEFDVVSREK ELLQEELIQL KSMIREYDSS KKKQTWEKVC SKEISVQFQL  180
H*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00049PBMTransfer from AT2G36610Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10017567m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410832.21e-132homeobox-leucine zipper protein ATHB-22
SwissprotQ4PSR75e-82ATB22_ARATH; Homeobox-leucine zipper protein ATHB-22
TrEMBLV4LNY21e-130V4LNY2_EUTSA; Uncharacterized protein
STRINGXP_006410832.11e-131(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36610.11e-73homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]