PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thhalv10017567m | ||||||||
Common Name | EUTSA_v10017567mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 182aa MW: 21489.4 Da PI: 8.4303 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.5 | 4.6e-18 | 65 | 119 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k+ ++t+eql+ Le+ F+++ +++ +++ +L+++lg++ +q+ vWFqNr+a++k+ Thhalv10017567m 65 KKKKMTSEQLKLLERSFQEEIKLDPNRKMKLSRELGIQPKQIAVWFQNRKARWKN 119 56789************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 108.2 | 5.8e-35 | 64 | 155 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+++++eq+klLE+sF+ee kL+p+rK++l+reLg+qp+q+avWFqnr+AR+k+kqlE ye+L++++d +++e+e L++e +L++ ++ Thhalv10017567m 64 EKKKKMTSEQLKLLERSFQEEIKLDPNRKMKLSRELGIQPKQIAVWFQNRKARWKNKQLELLYESLRQEFDVVSREKELLQEELIQLKSMIR 155 69**************************************************************************************8876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.35E-18 | 45 | 122 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.969 | 60 | 120 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.1E-14 | 65 | 124 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.02E-13 | 65 | 121 | No hit | No description |
Pfam | PF00046 | 1.9E-15 | 65 | 119 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-19 | 66 | 126 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 95 | 118 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 182 aa Download sequence Send to blast |
MEYWSSPFIN GDSSSIFNYP FHSFDHFSGT MVETQGVPLH EHHVPPEMVG SSYGEASNNI 60 NGYEKKKKMT SEQLKLLERS FQEEIKLDPN RKMKLSRELG IQPKQIAVWF QNRKARWKNK 120 QLELLYESLR QEFDVVSREK ELLQEELIQL KSMIREYDSS KKKQTWEKVC SKEISVQFQL 180 H* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00049 | PBM | Transfer from AT2G36610 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Thhalv10017567m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006410832.2 | 1e-132 | homeobox-leucine zipper protein ATHB-22 | ||||
Swissprot | Q4PSR7 | 5e-82 | ATB22_ARATH; Homeobox-leucine zipper protein ATHB-22 | ||||
TrEMBL | V4LNY2 | 1e-130 | V4LNY2_EUTSA; Uncharacterized protein | ||||
STRING | XP_006410832.1 | 1e-131 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1660 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G36610.1 | 1e-73 | homeobox protein 22 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thhalv10017567m |
Entrez Gene | 18026436 |
Publications ? help Back to Top | |||
---|---|---|---|
|