PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10017537m
Common NameEUTSA_v10017537mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 191aa    MW: 20426.8 Da    PI: 4.5978
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10017537mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.6e-181464255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      y+GVr+++++++Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  Thhalv10017537m 14 LYRGVRQRRNSNKWVSEIREPR----KpNRIWLGTFSTPEMAAIAYDVAALALKG 64
                     69******************94....478***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.30E-281374No hitNo description
PfamPF008479.0E-121364IPR001471AP2/ERF domain
PROSITE profilePS5103221.181472IPR001471AP2/ERF domain
SMARTSM003801.9E-311478IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-201474IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-271474IPR001471AP2/ERF domain
PRINTSPR003673.1E-51526IPR001471AP2/ERF domain
PRINTSPR003673.1E-53854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MPGTSKDNGG RHPLYRGVRQ RRNSNKWVSE IREPRKPNRI WLGTFSTPEM AAIAYDVAAL  60
ALKGTQTELN FPNSASSLPV PASMSPGDIQ AAAASAAAAF GAARDAIVLA NNNSETSGAS  120
HSNMMMMNGS YNENTNMNGF IDEDLIFDMP NVLMNMAEGM LLSPPRAPAF DAASDADCYT  180
GADDYLWNFP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-13774274Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10017537m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410822.11e-138ethylene-responsive transcription factor ERF024
SwissprotQ9SJR06e-96ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLV4LNX41e-137V4LNX4_EUTSA; Uncharacterized protein
STRINGXP_006410822.11e-137(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64242546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.14e-87ERF family protein