PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10017520m

Common Name

EUTSA_v10017520mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bHLH

Protein Properties

Length: 148aa MW: 16477.3 Da PI: 4.2861

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10017520m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.5	2.8e-09	1	32	20	55
HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 20 feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 f+ Lr+l+P++ ++Kl+Ka+ L +++eYI+ Lq Thhalv10017520m 1 FQMLRQLIPNS----DQKLDKASFLLEVIEYIQFLQ 32 799*****9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.67E-11	1	52	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.515	1	31	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-13	1	51	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-6	1	32	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.32E-8	1	34	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
FQMLRQLIPN SDQKLDKASF LLEVIEYIQF LQEKANKYET PYQGWNHEPA KLLNWLVPEG 60 TVAFAPKLEE EKNNIPVPAL ATEQGARNSL FSPVIAGNPV TQFHTRDASS ETVEPSPSSR 120 SLTQPLKEEG EEDDDEVHEG NISISSV*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10017520m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353313	6e-86	AK353313.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-P07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006399299.1	1e-77	transcription factor BIM1 isoform X3
Refseq	XP_024012000.1	1e-77	transcription factor BIM1 isoform X3
Swissprot	Q9LEZ3	3e-61	BIM1_ARATH; Transcription factor BIM1
TrEMBL	V4NWJ1	1e-103	V4NWJ1_EUTSA; Uncharacterized protein (Fragment)
STRING	XP_006409768.1	1e-104	(Eutrema salsugineum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.3	3e-65	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thhalv10017520m
Entrez Gene	18026644

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]