PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thhalv10017421m | ||||||||
Common Name | EUTSA_v10017421mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 127aa MW: 14151.4 Da PI: 5.876 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.1 | 2.3e-06 | 14 | 54 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + R d++ ++++ L++l+ + +K + a++L +A++YI+ Lq Thhalv10017421m 14 QERKDKVGERISALQQLVSPY-----GKTDTASVLLEAMQYIQFLQ 54 67889999***********99.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.69 | 4 | 53 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-5 | 10 | 59 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.5E-10 | 11 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-12 | 12 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.64E-6 | 16 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 127 aa Download sequence Send to blast |
MLMMLELCCS LVKQERKDKV GERISALQQL VSPYGKTDTA SVLLEAMQYI QFLQEQVKVL 60 SAPYLQTTPI TTQEELEENS LRSRGLCLVP MEYTLGVAQT NGADIWAHVK TPTTPAFNLK 120 SNSPFR* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Thhalv10017421m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ576041 | 5e-83 | AJ576041.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH-beta gene). | |||
GenBank | BT010911 | 5e-83 | BT010911.1 Arabidopsis thaliana At2g31730 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024003772.1 | 1e-79 | transcription factor bHLH153 isoform X1 | ||||
Swissprot | Q7XJU2 | 5e-64 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | V4NXU6 | 2e-88 | V4NXU6_EUTSA; Uncharacterized protein | ||||
STRING | XP_006410303.1 | 3e-89 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3316 | 27 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G05710.5 | 2e-66 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thhalv10017421m |
Entrez Gene | 18027981 |
Publications ? help Back to Top | |||
---|---|---|---|
|