PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10017267m

Common Name

EUTSA_v100172670mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

LBD

Protein Properties

Length: 197aa MW: 22106.1 Da PI: 7.3064

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10017267m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.9	4e-39	15	107	8	100
DUF260 8 lrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 rr+CakdC++apyfp ++p+kfa+vhk+FGasnv+k+l++lp ++r da++slv+eA+ar+rdPvyG+vg i+ lq+q++ql+ +la++++e Thhalv10017267m 15 SRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAE 107 589*************************************************************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.158	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-38	15	105	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MTFSRIIGHV LHVSSRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ 60 RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ LAVAQAEILC IQMQHEPTLQ 120 SHHQVIELDQ DHKALLLHNN NNNTISNCNN SNNNNNLGYA MSSGQFNSNF ASPSSIMQMQ 180 MQMQMQDPLK QESLWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-43	16	118	19	124	LOB family transfactor Ramosa2.1
5ly0_B	5e-43	16	118	19	124	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10017267m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB164306	0.0	AB164306.1 Arabidopsis thaliana ASL5 mRNA for ASYMMETRIC LEAVES2-like gene 5 protein, partial cds.
GenBank	AB473838	0.0	AB473838.1 Arabidopsis thaliana ASL5 mRNA for ASYMMETRIC LEAVES2-like 5 protein, complete cds.
GenBank	AY086960	0.0	AY086960.1 Arabidopsis thaliana clone 29970 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006410082.2	1e-132	LOW QUALITY PROTEIN: LOB domain-containing protein 12
Swissprot	Q8LBW3	1e-104	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	V4LLY9	1e-139	V4LLY9_EUTSA; Uncharacterized protein (Fragment)
STRING	XP_006410082.1	1e-140	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-105	LBD family protein

Link Out ? help Back to Top
Phytozome	Thhalv10017267m
Entrez Gene	18026913

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]