PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10017073m

Common Name

EUTSA_v10017073mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

LBD

Protein Properties

Length: 272aa MW: 29289 Da PI: 8.7141

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10017073m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.2	3.1e-39	52	150	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++ e++r da++slvyeA+ r+rdP+yG++g i++lq+++++l++el Thhalv10017073m 52 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSEL 145 7********************************************************************************************* PP DUF260 95 allke 99 ++++ Thhalv10017073m 146 TTVRT 150 99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.067	51	152	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-40	52	149	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MSRGREGFGE YYEVVKKIKK DPTFETTTDH AVMGIRRHVA VPPGTTLNTV TPCAACKLLR 60 RRCAEECPFS PYFSPHEPHK FAAVHKVFGA SNVSKMLLEV GESQRGDAAN SLVYEANLRL 120 RDPIYGCMGA ISALQHHIQS LQSELTTVRT DILRHKYREA ATITSLQNNN NNNNFNNTTT 180 SSVSDHALAA AILLPPPPPP LPPPRPPRLL SSQPAPPPTP PASLPSPSMV VSSSSSSNSS 240 ATNSMYNPPP SSAAAGYSNS LSSDNNVHFF D*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-40	45	163	4	122	LOB family transfactor Ramosa2.1
5ly0_B	2e-40	45	163	4	122	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10017073m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006410122.1	0.0	LOB domain-containing protein 13
Swissprot	Q9AT61	1e-135	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	V4LM19	0.0	V4LM19_EUTSA; Uncharacterized protein
STRING	XP_006410122.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1927	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	1e-120	LOB domain-containing protein 13

Link Out ? help Back to Top
Phytozome	Thhalv10017073m
Entrez Gene	18026598

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]