PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thhalv10017054m | ||||||||
Common Name | EUTSA_v10017054mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 279aa MW: 32143.1 Da PI: 7.8789 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.7 | 2.7e-50 | 17 | 141 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGfrFhPtdeel+ +yL++kve+k+++l e ik++diyk++PwdLp+ + +ekewyfF+ r +ky+++ r+nr+t sg+Wkatg dk+++s Thhalv10017054m 17 LPGFRFHPTDEELLGYYLRRKVENKPIRL-ELIKQIDIYKFDPWDLPRVSNVKEKEWYFFCMRGRKYRNSVRPNRVTGSGFWKATGIDKPIYS- 108 69***************************.99***************87778999**************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 + vglkk+Lv+y g+a kg+ktdW+mhe+rl Thhalv10017054m 109 NLVCVGLKKSLVYYLGSAGKGTKTDWMMHEFRL 141 9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 53.607 | 16 | 165 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.96E-56 | 16 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-25 | 18 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005992 | Biological Process | trehalose biosynthetic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006561 | Biological Process | proline biosynthetic process | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010120 | Biological Process | camalexin biosynthetic process | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 279 aa Download sequence Send to blast |
MSGDGREHEE EEDETTLPGF RFHPTDEELL GYYLRRKVEN KPIRLELIKQ IDIYKFDPWD 60 LPRVSNVKEK EWYFFCMRGR KYRNSVRPNR VTGSGFWKAT GIDKPIYSNL VCVGLKKSLV 120 YYLGSAGKGT KTDWMMHEFR LPATTKSDSP AEQAEVWTLC RIFKRVTQHR NPTSVQPNRK 180 PVITLTDSCS KTSSLDSDHT SHHRVVDSLP HKLQEPTLQP QTQTAYWNQH TVGFNQPTYT 240 CYDTNFLSFC NINGGDFIGD AASWDELRSV IDGNTQHL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-52 | 18 | 165 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-52 | 18 | 165 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-52 | 18 | 165 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-52 | 18 | 165 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-52 | 18 | 165 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-52 | 18 | 165 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00310 | DAP | Transfer from AT2G43000 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Thhalv10017054m |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK352673 | 0.0 | AK352673.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-06-P15. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006411573.1 | 0.0 | transcription factor JUNGBRUNNEN 1 | ||||
Swissprot | Q9SK55 | 1e-166 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | E4MVX6 | 0.0 | E4MVX6_EUTHA; mRNA, clone: RTFL01-06-P15 | ||||
TrEMBL | V4P165 | 0.0 | V4P165_EUTSA; Uncharacterized protein | ||||
STRING | XP_006411573.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G43000.1 | 1e-148 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thhalv10017054m |
Entrez Gene | 18026752 |