PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10016998m | ||||||||
Common Name | EUTSA_v10016998mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | bHLH | ||||||||
Protein Properties | Length: 302aa MW: 32803.1 Da PI: 7.9706 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.2 | 1.1e-11 | 234 | 279 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L+el+P+ +k s a++L +Ave+Ik Lq Thhalv10016998m 234 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVEHIKGLQ 279 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.056 | 228 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.11E-14 | 231 | 292 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.01E-11 | 232 | 283 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.6E-13 | 233 | 290 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.3E-9 | 234 | 279 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.5E-13 | 234 | 284 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0071215 | Biological Process | cellular response to abscisic acid stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MYPPSSSSKS TPPNDADNDR YDSAAGATRD FSSLNSQTLH NPPARQQHNP NVGGHYFPGD 60 PSSFGPDSGA SPSLFRHRSS PAGFYDQHLP TDPNGFSLGR ANGGYGGGGE RGPSRLKSEL 120 RFSGGSSSSH QEHNSLPRIS EVEAATAAIN GVASTSMNFG NDHNNWDNSA HISFTIDETG 180 KRSKTTDFFT LETQFSMPQT SLEMARMESL MNIPEDSVPC KVRAKRGCAT HPRSIAERER 240 RTRISGKLKK LQELVPNMDK QTSYADMLDL AVEHIKGLQH QVESLEKGME RCTCGAACKK 300 R* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10016998m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC004450 | 1e-88 | AC004450.3 Arabidopsis thaliana chromosome 2 clone F14B2 map CIC10F02, complete sequence. | |||
GenBank | CP002685 | 1e-88 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006411590.1 | 0.0 | transcription factor bHLH129 isoform X2 | ||||
Swissprot | Q9ZW81 | 1e-135 | BH129_ARATH; Transcription factor bHLH129 | ||||
TrEMBL | V4MK69 | 0.0 | V4MK69_EUTSA; Uncharacterized protein | ||||
STRING | XP_006411590.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10329 | 18 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43140.2 | 1e-146 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10016998m |
Entrez Gene | 18026766 |