PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016890m
Common NameEUTSA_v10016890mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family G2-like
Protein Properties Length: 341aa    MW: 38910.4 Da    PI: 9.2434
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016890mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.36.2e-3253106255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      prlrWtp+LH rFv+ave+LGG+e+AtPk ++++m++kgL+++hvkSHLQ+YR+
  Thhalv10016890m  53 PRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMYRS 106
                      8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-2949107IPR009057Homeodomain-like
PROSITE profilePS5129412.75949109IPR017930Myb domain
SuperFamilySSF466891.97E-1451107IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-2253108IPR006447Myb domain, plants
PfamPF002491.2E-954105IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MIPCMERGRK TEEEEDEEEV EDEGEESKVS SNSTVEESDK KAKVRPYVRS KVPRLRWTPD  60
LHLRFVRAVE RLGGQERATP KLVRQMMNIK GLSIAHVKSH LQMYRSKKID DQGQAIADHR  120
HFIETSTDRN IYKLSQLPMF RGNTHNHDSQ FRYGSMFSNA SLRNSSSHET NRSLIDKPGL  180
IRGSSVSNNI HGSEYMTNNR SFQNIYSSSI SNHVPRLRHN HQERTNSVTF DDHIQGHSRK  240
FEKFPIGIEE STNHTYFNKT TAKRNASTSI DLDLDLSLKL RVPETTNLEE TKTAATTTDQ  300
TLSLSLCSGS SSWKKSRVIK TDEEDWTVKI GKASTLDLTL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-1554108458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-1554108458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A9e-1654108357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-1654108357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-1654108357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-1654108357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-1554108458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-1554108458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-1554108458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-1554108458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-1554108458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-1554108458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016890m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411030.10.0putative two-component response regulator ARR20
TrEMBLV4MIW10.0V4MIW1_EUTSA; Uncharacterized protein
STRINGXP_006411030.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-151G2-like family protein