PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016870m
Common NameEUTSA_v10016870mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family TCP
Protein Properties Length: 350aa    MW: 38568.3 Da    PI: 7.1007
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016870mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP101.21.7e-3127132189
              TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsss 87 
                      a+g+kdrhsk+ T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai +l  t+ + + ++       e++  ++++++   
  Thhalv10016870m  27 ATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIEKLEVTQEPEN-NTntgssppEPNLVNNQTQFV-- 117
                      589**************************************************************44444.221222222222222222222.. PP

              TCP  88 g.............k 89 
                      +              
  Thhalv10016870m 118 AanldpedamktffP 132
                      123445555433321 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.2E-2928109IPR005333Transcription factor, TCP
PROSITE profilePS5136932.0263088IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGLKGYSVGG DIGGEIVEVQ GGHIIRATGR KDRHSKVFTS KGPRDRRVRL SAHTAIQFYD  60
VQDRLGYDRP SKAVDWLIKK AKSAIEKLEV TQEPENNTNT GSSPPEPNLV NNQTQFVAAN  120
LDPEDAMKTF FPATTTTTTT GGGTNMNFQN YPHHGDDNIV SRTAARTTPN LSQDLGLSLH  180
TFQGNNNNNN NTVVPETNSF VTTPFETFGR ISGWNHHDLA MTSPSSPSEQ EQERSNGGFM  240
VNHHHHQPSM MTLLNSQQQQ VFLGGQQQQR GTLQSSLFPH SIRSWDHHHH HHQTTSDHHH  300
NQASSSVMFA SPSQFGSHGM MMMQGLSFPI HGEEATQPNS PSSTPNSHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-213588154Putative transcription factor PCF6
5zkt_B2e-213588154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016870m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530250.0AK353025.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-K11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410230.10.0transcription factor TCP10
RefseqXP_006410231.10.0transcription factor TCP10
RefseqXP_024003662.10.0transcription factor TCP10
SwissprotO822771e-144TCP10_ARATH; Transcription factor TCP10
TrEMBLE4MWX80.0E4MWX8_EUTHA; mRNA, clone: RTFL01-19-K11
TrEMBLV4M6050.0V4M605_EUTSA; Uncharacterized protein
STRINGXP_006410230.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141581924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.11e-115TCP domain protein 10
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]