PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10016853m | ||||||||
Common Name | EUTSA_v10016853mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | WRKY | ||||||||
Protein Properties | Length: 361aa MW: 40862.3 Da PI: 10.2723 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.2 | 5.4e-31 | 294 | 352 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp ++++tYe eHnh+k Thhalv10016853m 294 DDYSWRKYGQKPIKGSPYPRGYYKCSSMrGCPARKHVERCLEDPAMLIVTYEAEHNHPK 352 99***********************9988****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.3E-17 | 244 | 290 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 3.6E-33 | 280 | 352 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.366 | 287 | 353 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.26E-26 | 290 | 352 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-37 | 292 | 352 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-26 | 294 | 351 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MEEIEGTNRA AVESCHRVLN LLCRPQQQDH GYDRSLVSET REAVFRFKRV ASLLNKSVGH 60 ARFRRAKKLQ THLSQSIFLD PCHQRTELPS PLKTPVLRSG FHELSLRPTD SLTLGTRSFS 120 LNSDSKAPLL QLSQQAMPSS NYPRLFPEHQ QQQQLHERLQ AHHLHQQQQQ QQQQKHQAEF 180 MLRKCNGGIS LSFDNSSCTP TMSSTRSFVS SLSIDGSVAN IEGKNSFHLV GVPSSTDQSS 240 QHSKRKCFMK GDEHGSIKCG SSSRCHCSKK RKHRVRRSIR VPAISNKVAD IPPDDYSWRK 300 YGQKPIKGSP YPRGYYKCSS MRGCPARKHV ERCLEDPAML IVTYEAEHNH PKLPSQTVTT 360 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-20 | 280 | 355 | 2 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00284 | DAP | Transfer from AT2G30590 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10016853m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353039 | 0.0 | AK353039.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-E12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006410164.1 | 0.0 | probable WRKY transcription factor 21 | ||||
Swissprot | O04336 | 0.0 | WRK21_ARATH; Probable WRKY transcription factor 21 | ||||
TrEMBL | V4M974 | 0.0 | V4M974_EUTSA; Uncharacterized protein | ||||
STRING | XP_006410164.1 | 0.0 | (Eutrema salsugineum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30590.1 | 0.0 | WRKY DNA-binding protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10016853m |
Entrez Gene | 18026881 |