PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016828m
Common NameEUTSA_v10016812mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family AP2
Protein Properties Length: 370aa    MW: 40933.6 Da    PI: 9.2476
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016828mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.1e-1771130155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  Thhalv10016828m  71 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 130
                      57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.6E-1771139IPR016177DNA-binding domain
PfamPF008475.2E-1371130IPR001471AP2/ERF domain
PROSITE profilePS5103220.12672138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-1572139IPR001471AP2/ERF domain
SMARTSM003801.9E-2572144IPR001471AP2/ERF domain
PRINTSPR003673.3E-57384IPR001471AP2/ERF domain
PRINTSPR003673.3E-5120140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MASMSSSDHG PKTETGCSGG GVGGGESSET VAASDQMMLY RGFKKAKKER GCTAKERISK  60
MPPCTAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQVYLGA YDDEEAAARA  120
YDLAALKYWG PGTLINFPVT DYTRDLEEMQ NLSREEYLAS LRRKSSGFSR GIAKYRGLQS  180
RWDASGSRMP GPEYFSNIHY GAGDDRGTEG DFLGSFCLER KIDLTGYIKW WGVNKTRQPE  240
SSSKASDDAK VEDAGTELKT LEHTSQATEP YKAPNLGVLR GTQRKEKQIS SPSSTSSALS  300
ILTASPAYKS LEDKVLKIQE ISSTRENDEN ANRNIISMEK SHGKEIEKPV VSHGVAQGRV  360
YVMDWETLA*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016828m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535340.0AK353534.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-D01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411435.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
SwissprotQ8GWK20.0AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLE4MYD70.0E4MYD7_EUTHA; mRNA, clone: RTFL01-50-D01
TrEMBLV4MJT00.0V4MJT0_EUTSA; Uncharacterized protein
STRINGXP_006411436.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.10.0AP2 family protein