PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10016775m

Common Name

EUTSA_v10016755mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

GeBP

Protein Properties

Length: 391aa MW: 44605.6 Da PI: 4.1353

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10016775m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	96.3	3.1e-30	64	158	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 ++++ws++ e+v+L ++d++++t++s+ +d+d+fy +vk+ i++++sk+ql++Ki++LKk+f ++++++ +gk sf++++d++if+ s++iW Thhalv10016775m 64 SKMIWSKNEELVILGSIVDYEKETKMSYRSDWDGFYGYVKDFIEANFSKQQLMDKIKNLKKRFLNNQARSIKGKGLSFTNTDDDEIFKTSMIIW 157 789******************************************************************************************* PP DUF573 97 g 97 Thhalv10016775m 158 A 158 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.9E-23	65	157	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MVSKKRLTCR DDSDDSSSDC LEIRPSGLPL PSSLLTRKHD DDISGTETML RKRKQAKTIA 60 SSSSKMIWSK NEELVILGSI VDYEKETKMS YRSDWDGFYG YVKDFIEANF SKQQLMDKIK 120 NLKKRFLNNQ ARSIKGKGLS FTNTDDDEIF KTSMIIWATN ETERASNENI DQAKDVPCVE 180 HESADENDEN MDQATAKDVP SEENELVNEN MDPAQDVPFA EHAQANENME QENEDVPYAE 240 HEQVDENMDQ ENEDVPYAEH ERVDENVDQE NVDVPNAEHE QANENMDQEN DVPDVEHEPV 300 SDITLENGKG EDEEGEEAGV DEMATLQDAL EAMTWYQSFG QYQQNRLRQN LKNIGAQRRK 360 ELADEWKALL GEEMRLYARK LTLAARLASA *

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MVSKKRLTCR DDSDDSSSDC LEIRPSGLPL PSSLLTRKHD DDISGTETML RKRKQAKTIA  60
SSSSKMIWSK NEELVILGSI VDYEKETKMS YRSDWDGFYG YVKDFIEANF SKQQLMDKIK  120
NLKKRFLNNQ ARSIKGKGLS FTNTDDDEIF KTSMIIWATN ETERASNENI DQAKDVPCVE  180
HESADENDEN MDQATAKDVP SEENELVNEN MDPAQDVPFA EHAQANENME QENEDVPYAE  240
HEQVDENMDQ ENEDVPYAEH ERVDENVDQE NVDVPNAEHE QANENMDQEN DVPDVEHEPV  300
SDITLENGKG EDEEGEEAGV DEMATLQDAL EAMTWYQSFG QYQQNRLRQN LKNIGAQRRK  360
ELADEWKALL GEEMRLYARK LTLAARLASA *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269\|PubMed:21875893}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10016775m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006410807.1	0.0	GLABROUS1 enhancer-binding protein-like 3 isoform X2
Swissprot	Q9SJM4	2e-94	STKLI_ARATH; GLABROUS1 enhancer-binding protein-like 3
TrEMBL	V4LNW2	0.0	V4LNW2_EUTSA; Uncharacterized protein
STRING	XP_006410809.1	0.0	(Eutrema salsugineum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36340.1	8e-83	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Thhalv10016775m
Entrez Gene	18027668

Publications ? help Back to Top
Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815] Nietzsche M, et al. STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1. Plant Physiol., 2018. 176(2): p. 1773-1792 [PMID:29192025]