PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016714m
Common NameEUTSA_v10016714mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 422aa    MW: 45493.7 Da    PI: 4.8456
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016714mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.7e-31213271259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Thhalv10016714m 213 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLIITYTSEHNHP 271
                      699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-31206273IPR003657WRKY domain
PROSITE profilePS5081133.201207273IPR003657WRKY domain
SuperFamilySSF1182901.96E-26210273IPR003657WRKY domain
SMARTSM007748.7E-38212272IPR003657WRKY domain
PfamPF031064.9E-26214271IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MDNFQGDLTD VVRGIGSGHV SSSPGPPEGP SPSSLSPPPT SDLHVDFPSV ASCQINPFGD  60
PFVSMTDPLL QLTANSGYFS GDGDNESNNS FAVFPKVFED DHIKSQCNVF PRIGNSQSNI  120
IQDASTCNSP ALAVSAVAAA SPWGMINVDT TNSPRNGLLV DNINNTSSSS QIQISSSPRN  180
LGIKRRKSQT KKVVCIPAPA AMNSRSSGEV VPSDLWAWRK YGQKPIKGSP YPRGYYRCSS  240
SKGCSARKQV ERSRTDPNML IITYTSEHNH PWPTQRNALA GSTRSSSSSS SNPSSKSSTA  300
TATASASATT SASCRISQNK EERKKCHADA AVKKEDVEER QDNMEFDNND VEADTYRPDF  360
QHQPEDFFAD LDELEDDSLT MLLSQGFPGD SSVGTNLENK TTNITNVFSD FFDDDESSRS  420
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-25187274280Disease resistance protein RRS1
5w3x_D4e-25187274280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016714m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4048630.0AF404863.1 Arabidopsis thaliana WRKY transcription factor 35 (WRKY35) mRNA, complete cds.
GenBankBT0292390.0BT029239.1 Arabidopsis thaliana At2g34830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410636.20.0probable WRKY transcription factor 35 isoform X1
SwissprotO647470.0WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLV4M7390.0V4M739_EUTSA; Uncharacterized protein
STRINGXP_006410636.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30852865
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-150WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]