PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016365m
Common NameEUTSA_v10016365mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GRAS
Protein Properties Length: 652aa    MW: 74777.5 Da    PI: 5.3272
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016365mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS354.61.5e-1082726482373
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfs 94 
                      ++lL+ cA+a+s+gd++ a  lL ++++++sp gd++qRla++f++AL+arl++s+  + ++   + ++ +++ +++l+a++++   sP++++ 
  Thhalv10016365m 272 RTLLTLCAQAISTGDKTTALDLLFQIRQQSSPLGDALQRLAHCFANALEARLQGSTGPMIQTYyDAITSLKETAADTLKAYRVYLSSSPFVTLM 365
                      6799**************************************************7666666654777777778********************* PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++   ++Il+a++ ++ +Hi+Df+i +G+QWp ++q +++R++ p +lRiTg++ p+ g   +e++eetg+rLa+++++++vpfe+++++++++
  Thhalv10016365m 366 YFFSFRMILDAAKDASVLHIVDFGILYGFQWPMFIQYISNRKDVPRKLRITGIELPQRGlrPAERIEETGRRLAEYCDRFNVPFEYKAIASQNW 459
                      **********************************************************9******************************999** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                      e++++++L+++p+E+laVn  l+l++l de++  e+ +rd+vLkl++s++P+v+v++  + + n++ F  rf ea+++ysalfd+++++lpr++
  Thhalv10016365m 460 ETIRIQDLDIRPNEVLAVNAGLRLKNLQDETGGEENcPRDAVLKLIRSMNPDVFVHSIVNGSFNAPFFTSRFKEAVYHYSALFDMFDSTLPRDN 553
                      ***********************************999******************************************************** PP

             GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372
                      +eri  Ere+ gre++nv+ace+ +r+er et+++W+ r+ +aGF++ p++ ++++  +  l+k    + + v+e+s++l++gWk+r+L++ S+
  Thhalv10016365m 554 QERIRFEREFYGREAMNVIACEEGDRVERPETYRQWQVRMVRAGFRQKPVKAEMVELFREKLKKWRyHKDFVVDENSKWLLQGWKGRTLYASSC 647
                      ***************************************************************9998999************************ PP

             GRAS 373 W 373
                      W
  Thhalv10016365m 648 W 648
                      * PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.286245628IPR005202Transcription factor GRAS
PfamPF035145.1E-106272648IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MDPNLEYYDE SILLNPNLDS FSSLDFDQNP NFLTDPTERQ YYPPSSDEND SSNTLLKYVS  60
QILMEESIGD KQSMFYDSLA LRKTEEMLQQ VITDSQAHSF SSDSMITTTT SDEFWKSSSS  120
SSIDSSGSAK IGTRPLVNEI LVKSMFSDAE SALQFKKGLE EASKFLPNSD QWVMNLETEK  180
PVSVKQEIGL SDQSRVKKNH EREVLDFEET RSSKQSAGNV EDGKITDMFD KVLLLDDECD  240
PPTVLEDKKR GEIKKKKNKN KKSSSGHVVD FRTLLTLCAQ AISTGDKTTA LDLLFQIRQQ  300
SSPLGDALQR LAHCFANALE ARLQGSTGPM IQTYYDAITS LKETAADTLK AYRVYLSSSP  360
FVTLMYFFSF RMILDAAKDA SVLHIVDFGI LYGFQWPMFI QYISNRKDVP RKLRITGIEL  420
PQRGLRPAER IEETGRRLAE YCDRFNVPFE YKAIASQNWE TIRIQDLDIR PNEVLAVNAG  480
LRLKNLQDET GGEENCPRDA VLKLIRSMNP DVFVHSIVNG SFNAPFFTSR FKEAVYHYSA  540
LFDMFDSTLP RDNQERIRFE REFYGREAMN VIACEEGDRV ERPETYRQWQ VRMVRAGFRQ  600
KPVKAEMVEL FREKLKKWRY HKDFVVDENS KWLLQGWKGR TLYASSCWVP S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-4227864811374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016365m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409948.10.0scarecrow-like protein 34
SwissprotP0C8840.0SCL34_ARATH; Scarecrow-like protein 34
TrEMBLV4NWZ80.0V4NWZ8_EUTSA; Uncharacterized protein
STRINGXP_006409948.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.10.0GRAS family protein