PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10016329m | ||||||||
Common Name | EUTSA_v10016329mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ARF | ||||||||
Protein Properties | Length: 703aa MW: 77732.7 Da PI: 7.5994 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.3 | 3.4e-24 | 115 | 216 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+lt+sd+++ g +++p+ +ae++ +++ + t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF ++ Thhalv10016329m 115 FAKTLTQSDANNGGGFSVPRYCAETIfprldytAEPPVQ--TVIAKDIHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFL--RS 204 89****************************987555555..8************************************************..45 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++ l+v+++r+ Thhalv10016329m 205 ESGDLCVGIRRA 216 89999****997 PP | |||||||
2 | Auxin_resp | 115.2 | 5.7e-38 | 282 | 365 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a+ +a+ +++FevvY+Prast+eF+vk+++v++a++++++ GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+ Thhalv10016329m 282 AVARAARGQAFEVVYYPRASTPEFCVKASDVRSAMRIRWCSGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 365 5678999***************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.9E-37 | 109 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.79E-29 | 110 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.50E-21 | 114 | 215 | No hit | No description |
Pfam | PF02362 | 5.8E-22 | 115 | 216 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.155 | 115 | 217 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-21 | 115 | 217 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.6E-32 | 282 | 365 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 18.361 | 589 | 677 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009743 | Biological Process | response to carbohydrate | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048589 | Biological Process | developmental growth | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 703 aa Download sequence Send to blast |
MEQEKSLDPQ LWHACAGSMV QIPSVNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV 60 AVKFLADAET DEVFSKITLL PLPGNDLDLE NDAVLGLTPS PDGNGPNGNE KPASFAKTLT 120 QSDANNGGGF SVPRYCAETI FPRLDYTAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL 180 TTGWSTFVNQ KKLIAGDSIV FLRSESGDLC VGIRRAKRGG LGSNGVGSDN NNIPYPGFSG 240 FLRDDETTTS KLMMMKRSGG NGNDANAAAG GGRVRVEAVA EAVARAARGQ AFEVVYYPRA 300 STPEFCVKAS DVRSAMRIRW CSGMRFKMAF ETEDSSRISW FMGTVSAVQV ADPIRWPNSP 360 WRLLQVAWDE PDLLQNVKRV SPWLVELVSN MPTIHLSPFS PRKKLRIPQP FEFPFDGTKF 420 PFFANNNGES MCYLSNDNNN NAPAGIQGAR QAQQLFGSPS PSLLSDLNNL NSYSAVNKLH 480 QSSSPAMFLS GFNPRHHHYD NIVLSRQGRD TEFNNNNNIS CSLTMGNPGL VHDKKKSGSV 540 KTHQFLLFGQ PILTEQQVMN RKRSLEEEAE AAQEEKTGSW NYGLQGLETG HCKVFMESED 600 VGRTLDLSVI GSYQELYRKL AEMFCIEERS DLLTHVVYRD ANGVIKRIGD EPFSDFMRAT 660 KRLTIKMDIG GDNVRKTWIT GIRNGENGID SSTKTGPLSI FA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-78 | 7 | 386 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10016329m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353058 | 0.0 | AK353058.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-J20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006409860.1 | 0.0 | auxin response factor 10 | ||||
Refseq | XP_024003967.1 | 0.0 | auxin response factor 10 | ||||
Swissprot | Q9SKN5 | 0.0 | ARFJ_ARATH; Auxin response factor 10 | ||||
TrEMBL | E4MX11 | 0.0 | E4MX11_EUTHA; Auxin response factor | ||||
TrEMBL | V4MFJ2 | 0.0 | V4MFJ2_EUTSA; Auxin response factor | ||||
STRING | XP_006409860.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | auxin response factor 10 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10016329m |
Entrez Gene | 18028038 |