PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016318m
Common NameEUTSA_v10016318mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GRAS
Protein Properties Length: 720aa    MW: 80972.6 Da    PI: 6.8655
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016318mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3781.1e-1153457141374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL++cA+av+++d ++a +lL++++++++p gd +qRla++f+++L+arla+++s++yk + +++ s    + +l+a++l+  ++P+ k+s
  Thhalv10016318m 345 LRSLLIHCAQAVAADDRRCAGQLLKQIRQHSTPFGDGNQRLAHCFANGLEARLAGTGSQIYKGIVSKPRS---AAAVLKAHQLYLTCCPFRKLS 435
                      689***************************************************************9999...999****************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++++N++I e v +++rvH+iDf+i +G+QWp+L++ ++   +g+p+lRiTg++ p++g   ++++ee g+rLa +A+e+gvpfe+++ +ak++
  Thhalv10016318m 436 YFITNRTIRELVGKSQRVHVIDFGILYGFQWPTLIHRFSL--HGSPRLRITGIEFPQPGfrPAQRVEEAGQRLAAYAKEFGVPFEYKA-IAKKW 526
                      ***************************************9..699*************9*****************************.7**** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      ++++le+L+++++E ++Vn+ ++ ++l+desv++es+rd+vL+l+ +++P+++v+   +  +n++ F++rf eal ++s++fd+le+ +pre+e
  Thhalv10016318m 527 DAIQLEDLDIDKDEIIVVNCLYRAENLHDESVKVESCRDAVLNLIGKINPDLFVFGIVNGAYNAPFFVTRFREALFHFSSIFDMLETIVPREDE 620
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      er+++E e++gre+ nv+aceg er+er et+++W+ r +++G+ +v+++ +++k+a   +++++ + + +++++ +l++gWk+r+++++S+W+
  Thhalv10016318m 621 ERMFLEMEVFGREALNVIACEGWERVERPETYKQWHVRAMRSGLVQVSFDPSIMKTALQKVNTFYHKDFVIDQDNRWLLQGWKGRTVMALSVWK 714
                      *****************************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.886319694IPR005202Transcription factor GRAS
PfamPF035144.0E-113345714IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MITEQGLNGL SGTINRTRLP DQSASSLPNH SFTPVPLFDG FNYNHLSDHR NTVVTSAPDN  60
FVFTREEDDP ADDFDFSDAV LGYISQMLME EDMEDKACML QESLDLEAAE RSLYEAIGKK  120
YPPSPEPNLA FVDRNTENLD HVVPGNYTGH RVGSGGFIKP LSGFTLDFRN PQNRSSVLSV  180
PQSSYSASNG LVTINGDGFE ESSNTLYPSG DNQSVWLFRR GIEEASRFLP EQNELIVSFR  240
EENSRSKGRK NPNRDEIGVE EERCSKLPAV FPETISRSDV VDKILVHIPG GESMIEFDAL  300
REVLKKGVEK KKTSAPQEGK RRARGRGRGR GGGGGQSGKR EVVDLRSLLI HCAQAVAADD  360
RRCAGQLLKQ IRQHSTPFGD GNQRLAHCFA NGLEARLAGT GSQIYKGIVS KPRSAAAVLK  420
AHQLYLTCCP FRKLSYFITN RTIRELVGKS QRVHVIDFGI LYGFQWPTLI HRFSLHGSPR  480
LRITGIEFPQ PGFRPAQRVE EAGQRLAAYA KEFGVPFEYK AIAKKWDAIQ LEDLDIDKDE  540
IIVVNCLYRA ENLHDESVKV ESCRDAVLNL IGKINPDLFV FGIVNGAYNA PFFVTRFREA  600
LFHFSSIFDM LETIVPREDE ERMFLEMEVF GREALNVIAC EGWERVERPE TYKQWHVRAM  660
RSGLVQVSFD PSIMKTALQK VNTFYHKDFV IDQDNRWLLQ GWKGRTVMAL SVWKSASKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4335171325378Protein SCARECROW
5b3h_A2e-4335171324377Protein SCARECROW
5b3h_D2e-4335171324377Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321330RARGRGRGRG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016318m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0046840.0AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410955.10.0scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLV4MIK60.0V4MIK6_EUTSA; Uncharacterized protein
STRINGXP_006410955.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein