PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10016259m

Common Name

EUTSA_v10016259mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

C2H2

Protein Properties

Length: 816aa MW: 89013 Da PI: 5.7484

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10016259m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0016	658	678	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cg + ++k++L rH+++H Thhalv10016259m 658 CSSCGVRLKQKEELDRHMQLH 678 *******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.118	656	683	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	658	678	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 816 aa Download sequence Send to blast
MHSNMRHLFG TWKGVFHPQT LQLIEKELGF NARSDGSAAA VTTGRADPQS QRPPHSIHVN 60 PKYLERQRLQ QSGRTKVMVT DVPEISNLTR DSDRLERVSS ISSGGSWAGP AKVNTIRRPQ 120 RDSLSEPLYE KDVASIAGEY DYASDLPHNS RSVIKKVGSR VTDDGCEKQW YEDMSRGPDL 180 ISDQRDELHT KSRISDYATA RLENSESSGP SRNIGVPYDS WKNSEEEEFM WDLHSRLSET 240 DVATINPKNE LQAPDESERL ESENHLLKRP RFPALDSRFD PATSINSYSC EQKDPNVFGR 300 WTSSPRSLHD SEVFPSIGTT SNAARKGIQP QSRVASSGIL PGTVSDRQSP LHDSTSKQNV 360 TKQDCRRAHS LPQRDPRASR FPAKSQSVPR DDSGRPLSSS TSSSQLKNTN TLQLPDASQV 420 EKFDSKPTAK NARGHTIAPE TTGQPNMADL LEAVMKSGIL SNNSTCGAIK EESSQNEVNP 480 MAPILSAAFK SKTLPPSLPI PVAGDNLLAR LKVEQSSAPL GSCAVSLASV TSAQTSKENS 540 KASDPLSCLL SSLVSQGLIS ASKKELPSLV QCVAPFITQD HSPDHSTNSS TSVSVVPSDA 600 QPLALVKKGQ SSAPKVAPVE TAKLEPENLI GLKFRADKIR ELHPSVISSL FDDLPHLCSS 660 CGVRLKQKEE LDRHMQLHDK KKLKLSGTDS KSRFWFPKAD DWIAGGAGEL EPEDEEVLSE 720 PEDEEVLSEP ESAVEDGPGV AADEDQCACI LCGEIFEEYF GQETGQWMFK GASYLTIPLA 780 NSETNGPIVH AVCLTKNSLQ SLEVGNAIKQ ETCFS*

Sequence ? help Back to Top

Protein Sequence Length: 816 aa Download sequence Send to blast

MHSNMRHLFG TWKGVFHPQT LQLIEKELGF NARSDGSAAA VTTGRADPQS QRPPHSIHVN  60
PKYLERQRLQ QSGRTKVMVT DVPEISNLTR DSDRLERVSS ISSGGSWAGP AKVNTIRRPQ  120
RDSLSEPLYE KDVASIAGEY DYASDLPHNS RSVIKKVGSR VTDDGCEKQW YEDMSRGPDL  180
ISDQRDELHT KSRISDYATA RLENSESSGP SRNIGVPYDS WKNSEEEEFM WDLHSRLSET  240
DVATINPKNE LQAPDESERL ESENHLLKRP RFPALDSRFD PATSINSYSC EQKDPNVFGR  300
WTSSPRSLHD SEVFPSIGTT SNAARKGIQP QSRVASSGIL PGTVSDRQSP LHDSTSKQNV  360
TKQDCRRAHS LPQRDPRASR FPAKSQSVPR DDSGRPLSSS TSSSQLKNTN TLQLPDASQV  420
EKFDSKPTAK NARGHTIAPE TTGQPNMADL LEAVMKSGIL SNNSTCGAIK EESSQNEVNP  480
MAPILSAAFK SKTLPPSLPI PVAGDNLLAR LKVEQSSAPL GSCAVSLASV TSAQTSKENS  540
KASDPLSCLL SSLVSQGLIS ASKKELPSLV QCVAPFITQD HSPDHSTNSS TSVSVVPSDA  600
QPLALVKKGQ SSAPKVAPVE TAKLEPENLI GLKFRADKIR ELHPSVISSL FDDLPHLCSS  660
CGVRLKQKEE LDRHMQLHDK KKLKLSGTDS KSRFWFPKAD DWIAGGAGEL EPEDEEVLSE  720
PEDEEVLSEP ESAVEDGPGV AADEDQCACI LCGEIFEEYF GQETGQWMFK GASYLTIPLA  780
NSETNGPIVH AVCLTKNSLQ SLEVGNAIKQ ETCFS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10016259m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006410825.2	0.0	polyadenylation and cleavage factor homolog 4
TrEMBL	V4MI71	0.0	V4MI71_EUTSA; Uncharacterized protein
STRING	XP_006410825.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6423	3	3

Link Out ? help Back to Top
Phytozome	Thhalv10016259m
Entrez Gene	18026429