PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10016241m

Common Name

EUTSA_v10016241mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

HD-ZIP

Protein Properties

Length: 847aa MW: 92863.5 Da PI: 6.3475

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10016241m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.4e-18	19	77	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Thhalv10016241m 19 KYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77 5678*****************************************************97 PP
2	START	190.5	8.2e-60	168	376	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 +aeea++e+++ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ ++tl vi g g+++l Thhalv10016241m 168 IAEEALAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAISRNCSGIAARACGLVSLEPM-KVAEILKDRPSWLRDCRCVDTLSVIPAGngGTIEL 260 799*****************************************************.8888888888*************999* PP EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183 ++++++a+++l++ Rdf+++Ry+ +l++g++v++++S++s + p sss+vRae++pSg+li+p+++g+s +++v+hvdl+++++++++r+ Thhalv10016241m 261 IYTQMYAPTTLAAaRDFWTLRYSTCLEDGSYVVCERSLTSATGGPVgppSSSFVRAEMRPSGFLIRPCEGGGSILHIVDHVDLDAWSVPEVMRP 354 ***************************************999999***************************************** PP HHHHHHHHHHHHHHHHTXXXXX CS START 184 lvksglaegaktwvatlqrqce 205 l++s+ + ++k++va+l++ ++ Thhalv10016241m 355 LYESSKILAQKMTVAALRHVRQ 376 ***************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.321	14	78	IPR001356	Homeobox domain
SMART	SM00389	5.7E-15	16	82	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.55E-17	18	82	IPR009057	Homeodomain-like
CDD	cd00086	4.06E-16	19	79	No hit	No description
Pfam	PF00046	6.4E-16	20	77	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.0E-18	21	77	IPR009057	Homeodomain-like
CDD	cd14686	5.44E-6	71	110	No hit	No description
PROSITE profile	PS50848	26.98	158	386	IPR002913	START domain
CDD	cd08875	2.96E-75	162	378	No hit	No description
Gene3D	G3DSA:3.30.530.20	2.8E-22	166	372	IPR023393	START-like domain
SuperFamily	SSF55961	3.98E-36	167	379	No hit	No description
SMART	SM00234	1.4E-62	167	377	IPR002913	START domain
Pfam	PF01852	4.7E-57	168	376	IPR002913	START domain
SuperFamily	SSF55961	1.92E-6	415	496	No hit	No description
SuperFamily	SSF55961	1.92E-6	528	603	No hit	No description
Pfam	PF08670	1.4E-49	700	845	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009855	Biological Process	determination of bilateral symmetry
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0010072	Biological Process	primary shoot apical meristem specification
GO:0080060	Biological Process	integument development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 847 aa Download sequence Send to blast
MMVHTMHRES PDKGLDSGKY VRYTPEQVEA LERVYTECPK PSSLRRQQLI RECPILSNIE 60 PKQIKVWFQN RRCREKQRKE AARLQTVNRK LNAMNKLLME ENDRLQKQVS HLVYENGHMK 120 HQLHTASGTT TDNSCESVVV SGQQHQQQNP NPQHQQRDAN NPAGLLSIAE EALAEFLSKA 180 TGTAVDWVQM IGMKPGPDSI GIVAISRNCS GIAARACGLV SLEPMKVAEI LKDRPSWLRD 240 CRCVDTLSVI PAGNGGTIEL IYTQMYAPTT LAAARDFWTL RYSTCLEDGS YVVCERSLTS 300 ATGGPVGPPS SSFVRAEMRP SGFLIRPCEG GGSILHIVDH VDLDAWSVPE VMRPLYESSK 360 ILAQKMTVAA LRHVRQIAQE TSGEVQYGGG RQPAVLRTFS QRLCRGFNDA VNGFVDDGWT 420 PMGSDGAEDI TVMINLSPGK FGGSQYGSSF LPSFGSGVLC AKASMLLQNV PPAVLVRFLR 480 EHRSEWADYG VDAYAAASLR ASPFAVPCAR AGGFPSNQVI LPLAQTVEHE EFLEVVRLEG 540 HAYSPEDMGL ARDMYLLQLC SGVDENVVGG CAQLVFAPID ESFADDAPLL PSGFRIIPLE 600 HKSTPNSASA NRTLDLASSL EGSTRQAGEA DQNDCNFRSV LTIAFQFTFD NHTRENVASM 660 ARQYVRSIVG SIQRVALAIA PRPGSNIGPI SVPTSPEALT LVRWISRSYR VHTGADLFGS 720 DSQTSGDTML RQLWNHTDAI LCCSLKTNAS PVFTFANQTG LDMLETTLVA LQDIMLDKTL 780 DESGRKALCS EFPKIMQQGY AHLPAGVCAS SMGRLVSYEQ ATVWKVLEDD ESNHCLAFMF 840 VNWSFV*

Sequence ? help Back to Top

Protein Sequence Length: 847 aa Download sequence Send to blast

MMVHTMHRES PDKGLDSGKY VRYTPEQVEA LERVYTECPK PSSLRRQQLI RECPILSNIE  60
PKQIKVWFQN RRCREKQRKE AARLQTVNRK LNAMNKLLME ENDRLQKQVS HLVYENGHMK  120
HQLHTASGTT TDNSCESVVV SGQQHQQQNP NPQHQQRDAN NPAGLLSIAE EALAEFLSKA  180
TGTAVDWVQM IGMKPGPDSI GIVAISRNCS GIAARACGLV SLEPMKVAEI LKDRPSWLRD  240
CRCVDTLSVI PAGNGGTIEL IYTQMYAPTT LAAARDFWTL RYSTCLEDGS YVVCERSLTS  300
ATGGPVGPPS SSFVRAEMRP SGFLIRPCEG GGSILHIVDH VDLDAWSVPE VMRPLYESSK  360
ILAQKMTVAA LRHVRQIAQE TSGEVQYGGG RQPAVLRTFS QRLCRGFNDA VNGFVDDGWT  420
PMGSDGAEDI TVMINLSPGK FGGSQYGSSF LPSFGSGVLC AKASMLLQNV PPAVLVRFLR  480
EHRSEWADYG VDAYAAASLR ASPFAVPCAR AGGFPSNQVI LPLAQTVEHE EFLEVVRLEG  540
HAYSPEDMGL ARDMYLLQLC SGVDENVVGG CAQLVFAPID ESFADDAPLL PSGFRIIPLE  600
HKSTPNSASA NRTLDLASSL EGSTRQAGEA DQNDCNFRSV LTIAFQFTFD NHTRENVASM  660
ARQYVRSIVG SIQRVALAIA PRPGSNIGPI SVPTSPEALT LVRWISRSYR VHTGADLFGS  720
DSQTSGDTML RQLWNHTDAI LCCSLKTNAS PVFTFANQTG LDMLETTLVA LQDIMLDKTL  780
DESGRKALCS EFPKIMQQGY AHLPAGVCAS SMGRLVSYEQ ATVWKVLEDD ESNHCLAFMF  840
VNWSFV*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269\|PubMed:11395776, ECO:0000269\|PubMed:15328016, ECO:0000269\|PubMed:15598805}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10016241m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by miR165 and miR166. {ECO:0000269\|PubMed:14999284, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ441291	0.0	AJ441291.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein 14 (ATHB-14 gene).
GenBank	AY099791	0.0	AY099791.1 Arabidopsis thaliana homeodomain transcription factor (At2g34710) mRNA, complete cds.
GenBank	BT000335	0.0	BT000335.1 Arabidopsis thaliana homeodomain transcription factor (At2g34710) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006410621.1	0.0	homeobox-leucine zipper protein ATHB-14
Swissprot	O04291	0.0	ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14
TrEMBL	V4M729	0.0	V4M729_EUTSA; Uncharacterized protein
STRING	XP_006410621.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4256	26	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34710.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Thhalv10016241m
Entrez Gene	18027040

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Jia X, et al. Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic. Plant Sci., 2015. 233: p. 11-21 [PMID:25711809] Müller CJ, et al. PHABULOSA Mediates an Auxin Signaling Loop to Regulate Vascular Patterning in Arabidopsis. Plant Physiol., 2016. 170(2): p. 956-70 [PMID:26637548] Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] Kim ES, et al. HAWAIIAN SKIRT regulates the quiescent center-independent meristem activity in Arabidopsis roots. Physiol Plant, 2016. 157(2): p. 221-33 [PMID:26968317] Husbands AY,Aggarwal V,Ha T,Timmermans MC In Planta Single-Molecule Pull-Down Reveals Tetrameric Stoichiometry of HD-ZIPIII:LITTLE ZIPPER Complexes. Plant Cell, 2016. 28(8): p. 1783-94 [PMID:27385814] Di Ruocco G, et al. Differential spatial distribution of miR165/6 determines variability in plant root anatomy. Development, 2018. [PMID:29158439] Wójcik AM,Nodine MD,Gaj MD miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis. Front Plant Sci, 2017. 8: p. 2024 [PMID:29321785] Hashimoto K,Miyashima S,Sato-Nara K,Yamada T,Nakajima K Functionally Diversified Members of the MIR165/6 Gene Family Regulate Ovule Morphogenesis in Arabidopsis thaliana. Plant Cell Physiol., 2018. 59(5): p. 1017-1026 [PMID:29462472]