PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016089m
Common NameEUTSA_v10016089mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 398aa    MW: 45494.4 Da    PI: 6.9448
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016089mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016152175123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y C+ Cg+ ++++ +Lk+H +  H
  Thhalv10016089m 152 YICGVCGRKCKTNLDLKKHFKQlH 175
                      89*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.1E-572142IPR029060PIN domain-like
PROSITE profilePS5015710.575152180IPR007087Zinc finger, C2H2
PROSITE patternPS000280154175IPR007087Zinc finger, C2H2
CDDcd061677.79E-12166306No hitNo description
Gene3DG3DSA:3.40.50.10101.1E-5237302IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MSLLCNSLET LYQKPFFPQK SHFFSFSDAK SPIPKFAAFP RRRQYPIKSC LKSASSSEID  60
MVKNKEGVFA PKEKKVVVLW DLDNKPPRGP PYEAATALRQ VAEKLGRVVE ISAYANRHAF  120
IHLPHWVVEE RRSRRNLDFA ERKGEVIPID PYICGVCGRK CKTNLDLKKH FKQLHERERQ  180
KKVNRMRSLK GKKRKKFKER YVSGNEKYNE AARRLLTPKV GYGLEAELRR AGVYVKTVED  240
KPQAADWAVK RQIQHSMTRG IDWLVLVSDD KDFADMLRKA READLGTVVV SDWDRALGRH  300
ADLWVPWSGV ENGEIGEADL VPGKRRRFDE EEEGGFGGGD GLFSLSYDED ETAEMTVESD  360
GFGRFNVSAF AEDEWVEDDE DFALSDSDDD SDDELCF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191195KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016089m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401878.10.0uncharacterized protein LOC18016405
TrEMBLV4NBN10.0V4NBN1_EUTSA; Uncharacterized protein
STRINGXP_006401878.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125842429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.10.0C2H2-like zinc finger protein