PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016088m
Common NameEUTSA_v10016088mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ZF-HD
Protein Properties Length: 267aa    MW: 28886.5 Da    PI: 8.508
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016088mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.92.1e-3256112459
      ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                      ++YkeClkNhAa +Ggha+DGCgEfmps + + +++a+l+CaACgCHRnFHRre++ 
  Thhalv10016088m  56 ATYKECLKNHAAGIGGHALDGCGEFMPSLSFNsNDPASLTCAACGCHRNFHRREEDP 112
                      78**************************9999889******************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-2949109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-3157109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.7E-2757110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.73358109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.08E-17169234IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-27172233IPR009057Homeodomain-like
TIGRFAMsTIGR015657.1E-25176232IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDVIATTTTT VSDFDSRKPE IEAPTRIQPA KPISFSNGKR CHHYHHHLAS EAVAVATYKE  60
CLKNHAAGIG GHALDGCGEF MPSLSFNSND PASLTCAACG CHRNFHRREE DPSSVSAIVP  120
AIEFRPHNRH QLPPPPPPSL GIRSPDEDDS ASPPPISSSY MLLALSGGAT AVPMSRKRFR  180
TKFSQFQKEK MFEFSERVGW RMPKADDVAV REFCREIGVE RSVFKVWMHN NKISGRGGAR  240
RANGGVGGGG DGGESVPTNV SFSSTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-231752351676ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016088m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533230.0AK353323.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-M06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400038.10.0zinc-finger homeodomain protein 8
SwissprotQ9LXG01e-153ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLE4MXS60.0E4MXS6_EUTHA; mRNA, clone: RTFL01-24-M06
TrEMBLV4N7A50.0V4N7A5_EUTSA; Uncharacterized protein
STRINGXP_006400038.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.11e-143homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]