PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10016088m | ||||||||
Common Name | EUTSA_v10016088mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ZF-HD | ||||||||
Protein Properties | Length: 267aa MW: 28886.5 Da PI: 8.508 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.9 | 2.1e-32 | 56 | 112 | 4 | 59 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 ++YkeClkNhAa +Ggha+DGCgEfmps + + +++a+l+CaACgCHRnFHRre++ Thhalv10016088m 56 ATYKECLKNHAAGIGGHALDGCGEFMPSLSFNsNDPASLTCAACGCHRNFHRREEDP 112 78**************************9999889******************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 4.0E-29 | 49 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.3E-31 | 57 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.7E-27 | 57 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.733 | 58 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.08E-17 | 169 | 234 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.8E-27 | 172 | 233 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 7.1E-25 | 176 | 232 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MDVIATTTTT VSDFDSRKPE IEAPTRIQPA KPISFSNGKR CHHYHHHLAS EAVAVATYKE 60 CLKNHAAGIG GHALDGCGEF MPSLSFNSND PASLTCAACG CHRNFHRREE DPSSVSAIVP 120 AIEFRPHNRH QLPPPPPPSL GIRSPDEDDS ASPPPISSSY MLLALSGGAT AVPMSRKRFR 180 TKFSQFQKEK MFEFSERVGW RMPKADDVAV REFCREIGVE RSVFKVWMHN NKISGRGGAR 240 RANGGVGGGG DGGESVPTNV SFSSTL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-23 | 175 | 235 | 16 | 76 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10016088m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353323 | 0.0 | AK353323.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-M06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006400038.1 | 0.0 | zinc-finger homeodomain protein 8 | ||||
Swissprot | Q9LXG0 | 1e-153 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | E4MXS6 | 0.0 | E4MXS6_EUTHA; mRNA, clone: RTFL01-24-M06 | ||||
TrEMBL | V4N7A5 | 0.0 | V4N7A5_EUTSA; Uncharacterized protein | ||||
STRING | XP_006400038.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2220 | 25 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15210.1 | 1e-143 | homeobox protein 30 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10016088m |
Entrez Gene | 18017966 |
Publications ? help Back to Top | |||
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