PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10016044m | ||||||||
Common Name | EUTSA_v10016044mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 255aa MW: 29085.8 Da PI: 4.9959 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42.4 | 8.6e-14 | 11 | 59 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyeys 50 i n++ r+ + kR +g++KKA EL +LC++ +++i fs + ++l ++ Thhalv10016044m 11 IGNQRARKNAYKKRMQGLIKKAGELTILCNMSACLIFFSRDdNRLVVWP 59 789************************************8625666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.825 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.3E-14 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 9.32E-23 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 2.22E-20 | 2 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-6 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-13 | 11 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-6 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-6 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MGRTKLKFAW IGNQRARKNA YKKRMQGLIK KAGELTILCN MSACLIFFSR DDNRLVVWPS 60 HEVAESLIER FYSLPDIERN QKAEDQESFI RTNTKKVENK LANCRKVITE LEMDHLMFQI 120 HNGRKLDDLS QTEIEKLISY SSKKIMGMGR ELGYTGHPFP CVYEPFMGNE SPSASDVASE 180 WRENSFSLMG SGSIYLMDQW FEDNPKVEEN CDEAHLPTMT SRFNLNVEPS DDDDDEDIKI 240 CKGENSKSGG ADDA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10016044m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006399123.1 | 0.0 | MADS-box transcription factor PHERES 2 | ||||
TrEMBL | V4N560 | 0.0 | V4N560_EUTSA; Uncharacterized protein | ||||
STRING | XP_006399123.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8774 | 13 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06500.1 | 6e-74 | AGAMOUS-like 96 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10016044m |
Entrez Gene | 18017199 |