PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016028m
Common NameEUTSA_v10016028mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family TCP
Protein Properties Length: 317aa    MW: 34324.3 Da    PI: 5.6957
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016028mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.33.8e-36681792112
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksa 94 
                      +++k++++++hTkv+gR+RR+R++++caar+F+L++eLG+++d++ti WLl+ ++pai+e+tgt++++a ++  +++ ++ ++++  +++   +
  Thhalv10016028m  68 PAQKRPSKDRHTKVEGRGRRIRIPVSCAARIFQLTRELGHKSDGETIRWLLERSEPAIIEATGTGTIPAIAVsVNGTLKVPTDSPPRHESDDGS 161
                      679*************************************************************999995554333333333322222333333 PP

              TCP  95 akskksqksaasalnlak 112
                          +++++ ++++++ +
  Thhalv10016028m 162 GDLVRKRRKRNCTSEFVN 179
                      344444444444444443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.1E-2974154IPR005333Transcription factor, TCP
PROSITE profilePS5136926.874128IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MESNKEGKAI REIDENSSSQ LTMANLSDPD PEAHPDMLMK EEDDDPLRKQ EVGFLQPMTN  60
SLILQTKPAQ KRPSKDRHTK VEGRGRRIRI PVSCAARIFQ LTRELGHKSD GETIRWLLER  120
SEPAIIEATG TGTIPAIAVS VNGTLKVPTD SPPRHESDDG SGDLVRKRRK RNCTSEFVNV  180
NEQDSSVTSG LAPITASNFG VNFMNVNTQN FLPFWPMGAT TPAFVTGGPH QMGHMWAIPT  240
FSAAPSILNV GTTRPVPSYV SNASTAAEPQ METSGGGGAT QTLRDFSLEI YDNKKELQFL  300
GGSGDNNSSP SSCPES*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00007PBMTransfer from 495258Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016028m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401898.10.0transcription factor TCP19
RefseqXP_024012296.10.0transcription factor TCP19
SwissprotQ9LT891e-131TCP19_ARATH; Transcription factor TCP19
TrEMBLV4NBQ00.0V4NBQ0_EUTSA; Uncharacterized protein
STRINGXP_006401898.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125832530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.21e-133TCP family protein