PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015908m
Common NameEUTSA_v10015908mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 285aa    MW: 32538.4 Da    PI: 9.6559
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015908mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.67e-231762449
                     -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     +n+sn qvtfskRr g++KKA+EL++LCdaeva+i+ s+ +k++ +
  Thhalv10015908m 17 QNESNLQVTFSKRRSGLFKKASELCTLCDAEVAIIVHSPGQKVFSF 62
                     79****************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.137666IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-31665IPR002100Transcription factor, MADS-box
CDDcd002652.88E-32774No hitNo description
SuperFamilySSF554552.35E-27781IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-19828IPR002100Transcription factor, MADS-box
PfamPF003191.5E-231662IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-192843IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-194364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MVRKSKGRQK IEMVKMQNES NLQVTFSKRR SGLFKKASEL CTLCDAEVAI IVHSPGQKVF  60
SFGHPNVKTV IDRFVDNDPP TPQQHGSMQL NEIRRNSNIR DLNNQLTQLT NQLESEKKKN  120
EDLKKIRKNS QVPERWWEKP IEELDLAQAK QFKSRLEELK REVTLEASKM FQTAGPQQNF  180
YAGSSSHAPF GVNNGNNFNL NLDQLNQRRM VDMNAFYNQN MLVSNRPLPF GNNFHGNAAE  240
ISVPEYNMTR PGYNQNQNLN FRGENISENE GYHGGYPPES GSGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-15795290MEF2 CHIMERA
6bz1_B1e-15795290MEF2 CHIMERA
6bz1_C1e-15795290MEF2 CHIMERA
6bz1_D1e-15795290MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015908m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400849.10.0agamous-like MADS-box protein AGL62
SwissprotQ9FKK21e-111AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLV4LIP10.0V4LIP1_EUTSA; Uncharacterized protein
STRINGXP_006400849.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-101AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]