PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10015772m

Common Name

EUTSA_v10015772mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

LBD

Protein Properties

Length: 121aa MW: 13411.5 Da PI: 8.2913

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10015772m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	111	8.4e-35	7	95	1	88
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C aCk+lrrkC++dCv++pyf eq +++fa+vhk+FGasnv+k l +lp ++r++a+ ++ yeA r+ dPvyG+v+++++lqqq + Thhalv10015772m 7 SCGACKFLRRKCNSDCVFSPYFSYEQaSSHFAAVHKIFGASNVSKHLLHLPLHQRSAAAITISYEALSRMCDPVYGCVAHVFALQQQSQ 95 6*********************9978********************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.788	6	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-32	7	96	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MAGHGSSCGA CKFLRRKCNS DCVFSPYFSY EQASSHFAAV HKIFGASNVS KHLLHLPLHQ 60 RSAAAITISY EALSRMCDPV YGCVAHVFAL QQQSQITLEI LYEKLISDVC FFGLRNQMYI 120 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-31	3	110	7	116	LOB family transfactor Ramosa2.1
5ly0_B	2e-31	3	110	7	116	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10015772m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17259263}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024012025.1	3e-63	LOB domain-containing protein 33
Swissprot	Q9LHS8	1e-59	LBD33_ARATH; LOB domain-containing protein 33
TrEMBL	V4N519	2e-83	V4N519_EUTSA; Uncharacterized protein
STRING	XP_006399068.1	3e-84	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	4e-62	LOB domain-containing protein 33

Link Out ? help Back to Top
Phytozome	Thhalv10015772m
Entrez Gene	18019275

Publications ? help Back to Top
Bargmann BO,Birnbaum KD,Brenner ED An undergraduate study of two transcription factors that promote lateral root formation. Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45 [PMID:24615800]