PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015705m
Common NameEUTSA_v10015705mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 353aa    MW: 39745.6 Da    PI: 4.2035
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015705mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.41.8e-2019111197
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      ffk+l ++d +++ + ++p +f+++++ +  +s++++l+ ++g sW vk+  +k+++  y+  +GW++Fv++n L e++ ++F+++ +++f  +
  Thhalv10015705m  19 FFKILRKEDLSSEIMRMIPHQFIRSISDN-SSSFKMVLKLPWGSSWPVKI--SKNPSFhYMEDRGWNRFVSDNALGENEYLTFTHEANMCF--N 107
                      99************************766.589*****************..99999857777**********************999*99..6 PP

                      EEEE CS
               B3  94 vkvf 97 
                      v ++
  Thhalv10015705m 108 VNIY 111
                      6655 PP
2B344.52.8e-142182941698
                      EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      + +pk+f++ h+ kk  +k  ++  e  +sWev + +  ++ +  +++GW++ +k+ gL +gD+++Fkl++   +e+++kv r
  Thhalv10015705m 218 FAIPKNFVDMHMPKK--TKLFKIHPEGENSWEVLYLV--TGVQSRFSAGWSRLAKDLGLVVGDVCTFKLIK--PTEMLLKVSR 294
                      58*********8664..55788889999*******55..55555599*********************987..5556777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-2013115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-2114118IPR015300DNA-binding pseudobarrel domain
CDDcd100176.50E-1917111No hitNo description
PROSITE profilePS5086313.32419114IPR003340B3 DNA binding domain
SMARTSM010191.3E-2419114IPR003340B3 DNA binding domain
PfamPF023622.1E-1819110IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-18203294IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-16203294IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.251203296IPR003340B3 DNA binding domain
CDDcd100178.75E-13204293No hitNo description
SMARTSM010191.3E-15206296IPR003340B3 DNA binding domain
PfamPF023629.9E-11218291IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009553Biological Processembryo sac development
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MVKNSGFGQI MQEGDNPGFF KILRKEDLSS EIMRMIPHQF IRSISDNSSS FKMVLKLPWG  60
SSWPVKISKN PSFHYMEDRG WNRFVSDNAL GENEYLTFTH EANMCFNVNI YEPDGTEMLR  120
PRESATIASS SGLNKREQRK EVKTEEIIES SSESSYPGLN KAESAGSRLK KKRELNLGKK  180
KAEKTGKPKK KKVDSAAGTS SLVPEFNLTI KKSHLLYFAI PKNFVDMHMP KKTKLFKIHP  240
EGENSWEVLY LVTGVQSRFS AGWSRLAKDL GLVVGDVCTF KLIKPTEMLL KVSRDGDDDA  300
DDDDDDADDD DDDDADDDDD DADDDDDDAD DDDDDDDDDD DDDDDDDDDD DV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170191KKRELNLGKKKAEKTGKPKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015705m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400343.10.0B3 domain-containing protein At5g18000
SwissprotQ9FJG21e-142Y5800_ARATH; B3 domain-containing protein At5g18000
TrEMBLV4N7Z10.0V4N7Z1_EUTSA; Uncharacterized protein
STRINGXP_006400343.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.11e-134VERDANDI
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]