PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015661m
Common NameEUTSA_v10015661mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 274aa    MW: 31201.7 Da    PI: 8.2376
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015661mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.71.9e-151051243
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                     ri n+  r +t+ kR+  + KKA+E S+LC+++ ++i+++++
  Thhalv10015661m 10 RITNEKTRITTYRKRKLCLYKKAKEFSTLCGVKTCLIVYGPS 51
                     89**************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.909151IPR002100Transcription factor, MADS-box
SMARTSM004325.6E-14160IPR002100Transcription factor, MADS-box
CDDcd002661.85E-26282No hitNo description
SuperFamilySSF554554.84E-182100IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-6323IPR002100Transcription factor, MADS-box
PfamPF003193.4E-151051IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-62338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-63859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGRKMVKMAR ITNEKTRITT YRKRKLCLYK KAKEFSTLCG VKTCLIVYGP SRAGDEVVME  60
PELWPEKENE VREIISKYRE TASSSCTKTY SVQECLEKSK ITKVEKVKYC PWDKRVDKCS  120
LSELYAVFVA VGNKIQEAAN RTHHQTYSDS TPWSTDQLGL FGYNQQCFEQ HQLFPMSTLE  180
HNGFTLLPFL NQLTLNSGEV ASFSTEQEMA AQAMFYASCS DGQYPPMVQR TAYLEPMQWG  240
LGSGMFNNVK PFTDYPMRFG QVCDLESSGK SPM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015661m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401423.10.0agamous-like MADS-box protein AGL82
TrEMBLV4NAK50.0V4NAK5_EUTSA; Uncharacterized protein
STRINGXP_006401423.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59481947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.11e-141M-type_MADS family protein