PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015651m
Common NameEUTSA_v10015651mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WOX
Protein Properties Length: 272aa    MW: 30093.3 Da    PI: 6.5741
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015651mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.82.4e-152888257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     r+R+++++eq+ +Le+ F++   +p +ee  ++ k l     + +++V++WFqNrR + ++
  Thhalv10015651m 28 RSRWSPKPEQILILESIFNSgIVNPPKEETVRIRKMLekfgAVGDANVFYWFQNRRSRSRR 88
                     89*****************99*************************************997 PP
2Wus_type_Homeobox106.22e-342790265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +r+RW+P+peQi iLe++++sG+++P+kee+ ri+++Le++G+++d+NVfyWFQNr++R+r++q
    Thhalv10015651m 27 VRSRWSPKPEQILILESIFNSGIVNPPKEETVRIRKMLEKFGAVGDANVFYWFQNRRSRSRRRQ 90
                       589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-142395IPR009057Homeodomain-like
PROSITE profilePS5007111.4182489IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-82694IPR009057Homeodomain-like
SMARTSM003892.0E-52693IPR001356Homeobox domain
PfamPF000464.3E-132888IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048830Biological Processadventitious root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDQEGSSKSH TGQGLSHSVP SNSTEPVRSR WSPKPEQILI LESIFNSGIV NPPKEETVRI  60
RKMLEKFGAV GDANVFYWFQ NRRSRSRRRQ RQLQAATAAA TTTRGAAEHQ HMTNMSMHQY  120
PYSNSEIDLG FGSCSNSSAN NFFNESSSQV SSFLLELASS SASGGNNSME NLFTMYGHES  180
DHHQQHSSID ASILSPSDQN SDFHYQQGLM TVFINGVPTE IKEGAIDMKA MFGENLVLLH  240
SSGLPLPTDE FGFLMHSLQH GQAYFLVPRQ T*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015651m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2514030.0AY251403.1 Arabidopsis thaliana WOX12 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400324.10.0WUSCHEL-related homeobox 12 isoform X2
SwissprotQ8GY251e-124WOX12_ARATH; WUSCHEL-related homeobox 12
TrEMBLV4LH820.0V4LH82_EUTSA; Uncharacterized protein
STRINGXP_006400324.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28192768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17810.21e-106WUSCHEL related homeobox 12
Publications ? help Back to Top
  1. Hu X,Xu L
    Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis.
    Plant Physiol., 2016. 172(4): p. 2363-2373
    [PMID:27784768]