PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10015598m | ||||||||
Common Name | EUTSA_v10015598mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 148aa MW: 16956.8 Da PI: 10.6106 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.4 | 3.2e-22 | 13 | 59 | 5 | 51 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +rq +fskRr g+lKKA LS+LC aevavi+fs++gkl+ +ss Thhalv10015598m 13 HAQRRQSSFSKRRSGLLKKARQLSTLCKAEVAVIVFSNSGKLFQFSS 59 6789*****************************************96 PP | |||||||
2 | K-box | 21.9 | 7.4e-09 | 116 | 143 | 37 | 64 |
K-box 37 hllGedLesLslkeLqqLeqqLekslkk 64 hl+G++L+ +s+k Lq+Le+qL+ +l + Thhalv10015598m 116 HLQGKKLNIMSMKVLQHLEHQLNAALIS 143 99***********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.9E-26 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.544 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-19 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.11E-23 | 5 | 74 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-20 | 13 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-19 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-19 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MGLCKLVIKR LAHAQRRQSS FSKRRSGLLK KARQLSTLCK AEVAVIVFSN SGKLFQFSST 60 GMTQTLMRYE NYQLSTDAPL ITSKAAISHA YEISKLQERH WYGTYSPLCC QFHFPHLQGK 120 KLNIMSMKVL QHLEHQLNAA LISEKERN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 4e-18 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6byy_B | 4e-18 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6byy_C | 4e-18 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6byy_D | 4e-18 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6bz1_A | 4e-18 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6bz1_B | 4e-18 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6bz1_C | 4e-18 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6bz1_D | 4e-18 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10015598m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024012193.1 | 3e-49 | agamous-like MADS-box protein AGL15 isoform X2 | ||||
Swissprot | Q39295 | 3e-44 | AGL15_BRANA; Agamous-like MADS-box protein AGL15 | ||||
TrEMBL | V4NC98 | 1e-105 | V4NC98_EUTSA; Uncharacterized protein (Fragment) | ||||
STRING | XP_006402118.1 | 1e-106 | (Eutrema salsugineum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 4e-33 | AGAMOUS-like 15 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10015598m |
Entrez Gene | 18017648 |